Variant report

Variant	rs7088209
Chromosome Location	chr10:118233329-118233330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10885924	1.00[AMR][1000 genomes]
rs11197662	1.00[AMR][1000 genomes]
rs11197680	1.00[AMR][1000 genomes]
rs60915080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118230800-118240600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118231200-118238200	Strong transcription	NHEK	skin
3	chr10:118231200-118238600	Strong transcription	HMEC	breast
4	chr10:118231400-118239400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118232000-118234600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118232400-118236400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:118232800-118235600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:118232800-118236000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:118232800-118236400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:118232800-118237200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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