Variant report

Variant	rs1120
Chromosome Location	chr4:85572374-85572375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85570877..85573206-chr4:85576322..85578713,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17367226	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs34855553	0.80[EUR][1000 genomes]
rs3789144	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41282379	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6827228	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72662993	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1120	PRKX	trans	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85518600-85574800	Weak transcription	Stomach Mucosa	stomach
2	chr4:85526800-85583000	Weak transcription	Gastric	stomach
3	chr4:85529400-85581600	Weak transcription	Ovary	ovary
4	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:85544600-85572400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:85545200-85576400	Weak transcription	Esophagus	oesophagus
7	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
8	chr4:85568400-85573200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:85568600-85572400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:85568600-85573200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:85568600-85574000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr4:85568800-85578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:85569200-85572800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
16	chr4:85569600-85577600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:85569600-85579200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:85569600-85582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:85569800-85575000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:85570000-85573400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:85570400-85572800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:85570600-85572400	Strong transcription	Fetal Intestine Large	intestine
23	chr4:85571000-85572600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:85571000-85588800	Weak transcription	Left Ventricle	heart
25	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:85571200-85572400	Weak transcription	Fetal Heart	heart
27	chr4:85571200-85581400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:85571400-85576000	Weak transcription	NHEK	skin
29	chr4:85571400-85579200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:85571600-85572400	Weak transcription	HMEC	breast
31	chr4:85571600-85573600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:85571600-85576000	Weak transcription	Fetal Intestine Small	intestine
33	chr4:85571800-85574600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:85572000-85574200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:85572200-85572400	Enhancers	Fetal Lung	lung
36	chr4:85572200-85574400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr4:85572200-85587800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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