Variant report

Variant	rs11202528
Chromosome Location	chr10:89483062-89483063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89479070..89480697-chr10:89482031..89483577,2	MCF-7	breast:
2	chr10:89418413..89421099-chr10:89482175..89484816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196566	Chromatin interaction
ENSG00000198682	Chromatin interaction

rs_ID	r²[population]
rs10509411	0.83[EUR][1000 genomes]
rs11202534	0.83[EUR][1000 genomes]
rs11202546	0.83[EUR][1000 genomes]
rs11202552	0.83[EUR][1000 genomes]
rs11525279	0.83[EUR][1000 genomes]
rs12269692	0.92[ASN][1000 genomes]
rs17092295	0.83[EUR][1000 genomes]
rs2302403	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2302404	0.99[ASN][1000 genomes]
rs56316206	0.83[EUR][1000 genomes]
rs57020146	0.83[EUR][1000 genomes]
rs66834269	0.83[EUR][1000 genomes]
rs7068856	0.83[EUR][1000 genomes]
rs9988780	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89462200-89494800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89463000-89489400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:89463000-89494600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:89466200-89494600	Weak transcription	A549	lung
7	chr10:89466800-89494600	Weak transcription	Hela-S3	cervix
8	chr10:89468600-89494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:89468800-89483200	Strong transcription	Osteobl	bone
10	chr10:89470200-89487000	Weak transcription	Aorta	Aorta
11	chr10:89470600-89493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:89473000-89577200	Weak transcription	Gastric	stomach
14	chr10:89473600-89494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:89473800-89493600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:89475200-89485600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:89475400-89487000	Weak transcription	Placenta	Placenta
18	chr10:89476000-89487000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:89476000-89494600	Weak transcription	NHDF-Ad	bronchial
20	chr10:89476200-89489800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:89476200-89489800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:89476200-89494000	Weak transcription	Fetal Stomach	stomach
23	chr10:89476200-89494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
25	chr10:89476400-89494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:89476400-89494800	Weak transcription	Spleen	Spleen
27	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
28	chr10:89477000-89489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:89477200-89494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:89477400-89500000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:89478000-89494800	Weak transcription	Ovary	ovary
32	chr10:89479200-89485000	Weak transcription	Adipose Nuclei	Adipose
33	chr10:89480000-89484000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:89480800-89484600	Weak transcription	Lung	lung
35	chr10:89481800-89483400	Strong transcription	NH-A	brain
36	chr10:89481800-89485000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:89482000-89483200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr10:89482200-89483400	Enhancers	Fetal Lung	lung
39	chr10:89482400-89483800	Enhancers	Fetal Intestine Small	intestine
40	chr10:89482400-89483800	Enhancers	Fetal Kidney	kidney
41	chr10:89482600-89483400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:89482600-89483600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:89482600-89483600	Enhancers	Small Intestine	intestine
44	chr10:89482600-89484000	Enhancers	Fetal Intestine Large	intestine
45	chr10:89482800-89483200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:89482800-89483200	Flanking Active TSS	Colonic Mucosa	Colon
47	chr10:89482800-89483200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr10:89482800-89483400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr10:89482800-89484000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:89482800-89484800	Weak transcription	Liver	Liver

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