Variant report

Variant	rs17092295
Chromosome Location	chr10:89533078-89533079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89526077..89527625-chr10:89531799..89535725,3	K562	blood:
2	chr10:89526081..89527597-chr10:89531587..89533299,2	K562	blood:
3	chr10:89531576..89533907-chr10:89541046..89543285,2	MCF-7	breast:
4	chr10:89531718..89534084-chr10:89536520..89538723,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509411	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11202528	0.83[EUR][1000 genomes]
rs11202534	1.00[EUR][1000 genomes]
rs11202546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11202575	0.82[CHB][hapmap]
rs11525279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2302404	0.89[GIH][hapmap];0.80[LWK][hapmap]
rs2306156	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56159564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316206	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57020146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66834269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068856	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900225	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:89473000-89577200	Weak transcription	Gastric	stomach
3	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
4	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
5	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
8	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
10	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
11	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
12	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
13	chr10:89507000-89557600	Weak transcription	Lung	lung
14	chr10:89510200-89553800	Weak transcription	Esophagus	oesophagus
15	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
16	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
17	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:89514600-89534600	Weak transcription	Ovary	ovary
19	chr10:89514600-89539800	Weak transcription	Fetal Kidney	kidney
20	chr10:89516000-89541200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:89516200-89535400	Weak transcription	Brain Anterior Caudate	brain
22	chr10:89516400-89541400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:89516400-89557800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:89518200-89556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:89518400-89559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:89520200-89542800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:89520400-89535600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:89520400-89556400	Weak transcription	Brain Germinal Matrix	brain
29	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
30	chr10:89521800-89540400	Weak transcription	Thymus	Thymus
31	chr10:89522200-89535200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:89522400-89535400	Weak transcription	NHLF	lung
33	chr10:89523200-89553000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:89523400-89535400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:89523400-89562800	Weak transcription	K562	blood
36	chr10:89523800-89562000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:89524600-89560400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:89526000-89535400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:89526000-89549000	Weak transcription	Brain Angular Gyrus	brain
40	chr10:89526200-89534600	Weak transcription	HUVEC	blood vessel
41	chr10:89526200-89549400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:89526600-89541400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:89527400-89534400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:89527400-89535800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:89527400-89539600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr10:89527400-89539600	Weak transcription	Fetal Brain Female	brain
47	chr10:89527400-89541000	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:89527400-89541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:89527400-89542600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:89527400-89553600	Weak transcription	Colon Smooth Muscle	Colon

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