Variant report

Variant	rs11202570
Chromosome Location	chr10:89573472-89573473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11202534	0.90[EUR][1000 genomes]
rs11202546	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11202552	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11202575	0.82[CHB][hapmap]
rs11525279	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17092295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306156	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56159564	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56316206	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57020146	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66834269	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7068856	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7900225	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
7	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
11	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
12	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
13	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
15	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
16	chr10:89556200-89573800	Strong transcription	HSMM	muscle
17	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
18	chr10:89557000-89575800	Weak transcription	NH-A	brain
19	chr10:89560600-89575000	Weak transcription	Small Intestine	intestine
20	chr10:89560800-89575600	Weak transcription	Fetal Brain Male	brain
21	chr10:89561600-89576600	Weak transcription	Fetal Kidney	kidney
22	chr10:89561800-89576200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:89562200-89574600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:89562200-89574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:89562400-89575000	Weak transcription	Psoas Muscle	Psoas
26	chr10:89562400-89577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:89562600-89575600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:89563000-89576600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:89563600-89574200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:89563600-89574400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr10:89563600-89575400	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:89563800-89576600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:89563800-89577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:89564000-89575000	Weak transcription	Fetal Heart	heart
35	chr10:89564000-89577200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:89564400-89574400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:89564400-89577200	Weak transcription	Lung	lung
38	chr10:89564800-89574400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:89564800-89575600	Weak transcription	Brain Substantia Nigra	brain
40	chr10:89565000-89574200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:89565200-89577000	Weak transcription	Ovary	ovary
42	chr10:89565600-89575000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:89565800-89574400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:89565800-89576000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:89566000-89575000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:89566600-89574800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:89567000-89574400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:89567000-89575000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:89567400-89576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr10:89567800-89574400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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