Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509545	1.00[CEU][hapmap]
rs10887830	1.00[CEU][hapmap]
rs10887831	0.95[YRI][hapmap]
rs11202761	0.87[ASN][1000 genomes]
rs11202766	0.82[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11202776	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12356177	1.00[CEU][hapmap]
rs12357364	0.82[CHB][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12411841	1.00[CEU][hapmap]
rs12412793	1.00[CEU][hapmap]
rs12413139	0.85[YRI][hapmap]
rs12414838	1.00[CEU][hapmap]
rs1342454	1.00[CEU][hapmap]
rs17112295	1.00[CEU][hapmap]
rs1813675	1.00[CEU][hapmap]
rs1857157	1.00[CEU][hapmap]
rs2477952	0.82[YRI][hapmap]
rs4934405	1.00[CEU][hapmap]
rs4934407	1.00[CEU][hapmap]
rs4934412	1.00[CEU][hapmap]
rs61640455	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7077844	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73355485	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73355487	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90292000-90297400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:90294800-90298000	Weak transcription	Liver	Liver
3	chr10:90296000-90299800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:90296200-90298200	Enhancers	Fetal Lung	lung
5	chr10:90296400-90297600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:90296400-90298800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:90296400-90302400	Enhancers	HSMMtube	muscle
8	chr10:90296600-90301800	Enhancers	HSMM	muscle
9	chr10:90296600-90302000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:90296600-90309200	Weak transcription	Psoas Muscle	Psoas
11	chr10:90296800-90298400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:90297000-90297600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:90297000-90298200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:90297200-90298000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:90297200-90298400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:90297200-90298400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:90297200-90300400	Enhancers	Fetal Kidney	kidney

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