Variant report

Variant	rs7077844
Chromosome Location	chr10:90312353-90312354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509545	1.00[CEU][hapmap]
rs10887830	1.00[CEU][hapmap]
rs11202766	0.83[ASN][1000 genomes]
rs11202767	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11202776	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356177	1.00[CEU][hapmap]
rs12411841	1.00[CEU][hapmap]
rs12412793	1.00[CEU][hapmap]
rs12414838	1.00[CEU][hapmap]
rs1342454	1.00[CEU][hapmap]
rs17112295	1.00[CEU][hapmap]
rs1813675	1.00[CEU][hapmap]
rs1857157	1.00[CEU][hapmap]
rs4934405	1.00[CEU][hapmap]
rs4934407	1.00[CEU][hapmap]
rs4934412	1.00[CEU][hapmap]
rs73355485	0.83[ASN][1000 genomes]
rs73355487	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90303000-90314200	Weak transcription	Right Atrium	heart
2	chr10:90307000-90315200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90311600-90313400	Enhancers	Dnd41	blood
4	chr10:90312000-90313000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:90312000-90313400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:90312200-90342400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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