Variant report

Variant	rs11202871
Chromosome Location	chr10:90616069-90616070
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11202869	1.00[AFR][1000 genomes]
rs11202905	0.86[AFR][1000 genomes]
rs3218611	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90611600-90617400	Weak transcription	Fetal Intestine Large	intestine
2	chr10:90612600-90618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:90612600-90618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90612600-90618800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:90612800-90618000	Weak transcription	NHEK	skin
6	chr10:90613000-90618400	Weak transcription	HMEC	breast
7	chr10:90614400-90616600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:90614600-90617600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:90614600-90620800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:90614800-90617400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:90614800-90617600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:90614800-90618400	Weak transcription	Fetal Heart	heart
13	chr10:90614800-90618400	Weak transcription	Fetal Lung	lung
14	chr10:90614800-90618400	Weak transcription	Stomach Mucosa	stomach
15	chr10:90614800-90618600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:90615400-90617200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:90615600-90618000	Weak transcription	Colonic Mucosa	Colon
18	chr10:90616000-90616600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr10:90616000-90617400	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links