Variant report

Variant	rs3218611
Chromosome Location	chr10:90774113-90774114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAMBPL1-1	chr10:90773876-90775542	NR_028035
2	lnc-STAMBPL1-1	chr10:90773876-90775542	NR_028034
3	lnc-STAMBPL1-1	chr10:90773876-90775542	NR_028036
4	lnc-STAMBPL1-1	chr10:90773876-90775542	NR_028033

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11202862	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs11202871	1.00[YRI][hapmap]
rs9988723	1.00[CHD][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv551841	chr10:90759724-90775756	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90754000-90779400	Weak transcription	HepG2	liver
2	chr10:90754000-90789600	Weak transcription	A549	lung
3	chr10:90755600-90776000	Weak transcription	Left Ventricle	heart
4	chr10:90755600-90776200	Weak transcription	Pancreas	Pancrea
5	chr10:90756200-90781800	Weak transcription	Stomach Mucosa	stomach
6	chr10:90760400-90780400	Weak transcription	Brain Angular Gyrus	brain
7	chr10:90761600-90779000	Weak transcription	Dnd41	blood
8	chr10:90761600-90779400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:90761800-90774200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:90761800-90776200	Weak transcription	Right Ventricle	heart
11	chr10:90761800-90779600	Weak transcription	HSMMtube	muscle
12	chr10:90761800-90779800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:90761800-90783800	Weak transcription	Gastric	stomach
14	chr10:90761800-90786200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:90762000-90775600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:90762400-90775400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:90762400-90785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:90762600-90777400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:90762600-90779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:90762600-90780400	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:90762600-90786000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:90762800-90778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:90762800-90781000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:90762800-90782000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:90763000-90779600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:90763400-90777600	Strong transcription	NHDF-Ad	bronchial
27	chr10:90763600-90780800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:90766000-90780400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:90766200-90785600	Strong transcription	GM12878-XiMat	blood
30	chr10:90766800-90776600	Strong transcription	HMEC	breast
31	chr10:90767200-90774600	Strong transcription	Hela-S3	cervix
32	chr10:90767200-90776800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:90767200-90778000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr10:90767400-90775600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:90767400-90778000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:90767400-90779000	Strong transcription	Liver	Liver
37	chr10:90767400-90781000	Strong transcription	Osteobl	bone
38	chr10:90767600-90776800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:90767600-90778800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:90767600-90780800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:90767600-90786600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:90767800-90777400	Weak transcription	Fetal Intestine Small	intestine
43	chr10:90767800-90779600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:90767800-90781800	Weak transcription	Small Intestine	intestine
45	chr10:90768000-90774600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:90768000-90776200	Strong transcription	HSMM	muscle
47	chr10:90768400-90776200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:90768400-90780000	Weak transcription	Psoas Muscle	Psoas
49	chr10:90768400-90785000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:90768800-90779200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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