Variant report

Variant	rs11203055
Chromosome Location	chr10:91025743-91025744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11203058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41284134	1.00[AFR][1000 genomes]
rs61343655	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020600-91027800	Weak transcription	Right Ventricle	heart
2	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
3	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
4	chr10:91021000-91031000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91022400-91026400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:91022400-91029600	Weak transcription	Adipose Nuclei	Adipose
7	chr10:91023000-91026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:91023200-91026600	Weak transcription	A549	lung
9	chr10:91023200-91029400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:91023400-91026400	Weak transcription	Fetal Heart	heart
11	chr10:91023400-91026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:91023600-91026800	Weak transcription	Brain Anterior Caudate	brain
13	chr10:91023600-91026800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:91023600-91027000	Weak transcription	Right Atrium	heart
15	chr10:91023600-91029600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:91023800-91026600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:91023800-91026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:91023800-91026800	Weak transcription	Osteobl	bone
19	chr10:91023800-91035000	Weak transcription	Psoas Muscle	Psoas
20	chr10:91024000-91026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:91024400-91027200	Enhancers	Brain Substantia Nigra	brain
22	chr10:91024800-91027000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:91024800-91029200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:91024800-91029400	Weak transcription	Hela-S3	cervix
25	chr10:91024800-91029600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:91024800-91029600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:91024800-91029800	Weak transcription	Placenta	Placenta
28	chr10:91025000-91025800	Enhancers	Brain Cingulate Gyrus	brain
29	chr10:91025000-91027000	Enhancers	Brain Angular Gyrus	brain
30	chr10:91025400-91025800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr10:91025400-91026000	Enhancers	Rectal Smooth Muscle	rectum
32	chr10:91025600-91025800	Flanking Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links