Variant report

Variant	rs11203058
Chromosome Location	chr10:91029935-91029936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11203055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41284134	1.00[AFR][1000 genomes]
rs61343655	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
2	chr10:91020800-91037600	Weak transcription	Aorta	Aorta
3	chr10:91021000-91031000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:91023800-91035000	Weak transcription	Psoas Muscle	Psoas
5	chr10:91027000-91034200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:91027000-91034400	Weak transcription	A549	lung
7	chr10:91027200-91034000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:91027200-91037400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:91027400-91036600	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:91028000-91035000	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:91028000-91037600	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:91029400-91030000	Flanking Active TSS	Liver	Liver
13	chr10:91029400-91030000	Enhancers	Brain Anterior Caudate	brain
14	chr10:91029400-91030000	Enhancers	Brain Substantia Nigra	brain
15	chr10:91029400-91030200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:91029400-91030200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:91029400-91030200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:91029400-91030400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:91029400-91030400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:91029400-91030400	Enhancers	Hela-S3	cervix
21	chr10:91029400-91030800	Enhancers	HepG2	liver
22	chr10:91029400-91031600	Enhancers	Fetal Intestine Large	intestine
23	chr10:91029600-91030000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:91029600-91030000	Enhancers	Fetal Heart	heart
25	chr10:91029600-91030000	Enhancers	NHDF-Ad	bronchial
26	chr10:91029600-91030200	Enhancers	Osteobl	bone
27	chr10:91029600-91030400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:91029600-91030600	Enhancers	Adipose Nuclei	Adipose
29	chr10:91029600-91031800	Enhancers	Fetal Intestine Small	intestine
30	chr10:91029800-91032000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links