Variant report

Variant	rs11203105
Chromosome Location	chr10:91153477-91153478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10509572	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10788642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887950	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887953	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887957	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10887959	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11203070	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11203072	0.85[ASN][1000 genomes]
rs11203090	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11203099	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11203106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11203109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11203112	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11203115	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11203119	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819073	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12248331	0.85[ASN][1000 genomes]
rs12255504	0.85[ASN][1000 genomes]
rs12356008	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12781453	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12781505	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1591051	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17120001	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17120004	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17121248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34234196	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34712773	0.83[ASN][1000 genomes]
rs35359667	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35830608	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3780878	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6586182	0.83[ASN][1000 genomes]
rs6586183	0.83[ASN][1000 genomes]
rs7073534	0.83[ASN][1000 genomes]
rs7085361	0.83[ASN][1000 genomes]
rs7088579	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7090346	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71479013	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7897619	0.83[ASN][1000 genomes]
rs7897873	0.83[ASN][1000 genomes]
rs7910389	0.83[ASN][1000 genomes]
rs7916812	0.85[ASN][1000 genomes]
rs884407	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11203105	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91151400-91154200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:91151600-91153600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr10:91151600-91153600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr10:91151600-91153600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr10:91151600-91153800	Active TSS	Brain Anterior Caudate	brain
6	chr10:91151600-91154000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:91151600-91154000	Flanking Active TSS	Liver	Liver
8	chr10:91151600-91154200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:91151600-91154200	Active TSS	Right Atrium	heart
10	chr10:91151600-91154200	Active TSS	NHLF	lung
11	chr10:91151800-91153800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:91151800-91153800	Active TSS	Brain Substantia Nigra	brain
13	chr10:91151800-91153800	Active TSS	Right Ventricle	heart
14	chr10:91151800-91154600	Active TSS	Fetal Muscle Leg	muscle
15	chr10:91151800-91154800	Active TSS	Brain Angular Gyrus	brain
16	chr10:91151800-91154800	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr10:91151800-91154800	Active TSS	Ovary	ovary
18	chr10:91152000-91153600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:91152000-91153800	Active TSS	Brain Hippocampus Middle	brain
20	chr10:91152000-91154200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:91152000-91154200	Active TSS	Rectal Smooth Muscle	rectum
22	chr10:91152000-91154600	Active TSS	GM12878-XiMat	blood
23	chr10:91152400-91153800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr10:91152400-91154000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:91152600-91153600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr10:91152600-91154000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr10:91152600-91154200	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr10:91152800-91154200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr10:91152800-91154200	Active TSS	Stomach Smooth Muscle	stomach
30	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:91152800-91174000	Weak transcription	Gastric	stomach
32	chr10:91153000-91153600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:91153000-91153600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:91153000-91153600	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr10:91153000-91154000	Enhancers	Primary B cells from peripheral blood	blood
36	chr10:91153000-91164200	Weak transcription	Esophagus	oesophagus
37	chr10:91153200-91153600	Enhancers	Primary T cells fromperipheralblood	blood
38	chr10:91153200-91153600	Flanking Active TSS	Fetal Muscle Trunk	muscle
39	chr10:91153200-91153600	Active TSS	Hela-S3	cervix
40	chr10:91153200-91153600	Active TSS	NHEK	skin
41	chr10:91153200-91153800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr10:91153200-91153800	Enhancers	Fetal Heart	heart
43	chr10:91153200-91153800	Enhancers	Fetal Intestine Large	intestine
44	chr10:91153200-91153800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr10:91153200-91153800	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:91153200-91153800	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr10:91153200-91153800	Enhancers	NHDF-Ad	bronchial
48	chr10:91153200-91154000	Enhancers	Primary T cells from cord blood	blood
49	chr10:91153200-91154000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:91153200-91154000	Active TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links