Variant report

Variant	rs35359667
Chromosome Location	chr10:91179694-91179695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91179113..91181163-chr10:91223513..91225946,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10788642	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10887950	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10887953	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10887957	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11203105	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11203106	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11203109	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11203112	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11203115	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11203119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12356008	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12781453	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12781505	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17121248	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090346	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35359667	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175400-91180200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
3	chr10:91175600-91181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:91175600-91181200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:91175600-91183800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
8	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
9	chr10:91175800-91182600	Weak transcription	Thymus	Thymus
10	chr10:91176000-91180000	Weak transcription	Colonic Mucosa	Colon
11	chr10:91176200-91186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:91176600-91182800	Weak transcription	Esophagus	oesophagus
13	chr10:91177000-91181400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:91177200-91181600	Strong transcription	Fetal Intestine Large	intestine
15	chr10:91177200-91181800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:91177400-91179800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:91177400-91182000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:91177600-91184000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:91178000-91183600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:91178000-91186000	Weak transcription	HMEC	breast
21	chr10:91178000-91186200	Weak transcription	HSMMtube	muscle
22	chr10:91178000-91186400	Weak transcription	Fetal Stomach	stomach
23	chr10:91178000-91187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:91178200-91179800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:91178200-91180200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:91178200-91180200	Weak transcription	Placenta	Placenta
27	chr10:91178200-91180200	Weak transcription	NHEK	skin
28	chr10:91178200-91180600	Weak transcription	Fetal Heart	heart
29	chr10:91178200-91182200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:91178200-91183800	Weak transcription	HepG2	liver
31	chr10:91178200-91184800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:91178200-91186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
34	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
35	chr10:91178400-91179800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:91178400-91179800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:91178400-91179800	Genic enhancers	Dnd41	blood
38	chr10:91178400-91180000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:91178400-91180000	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:91178400-91180000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:91178400-91180000	Weak transcription	HSMM	muscle
42	chr10:91178400-91180400	Weak transcription	Left Ventricle	heart
43	chr10:91178400-91180400	Active TSS	GM12878-XiMat	blood
44	chr10:91178400-91180800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:91178400-91180800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:91178400-91181400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:91178400-91181600	Weak transcription	Brain Angular Gyrus	brain
48	chr10:91178400-91182000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:91178400-91182800	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:91178400-91183000	Weak transcription	Fetal Thymus	thymus

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