Variant report

Variant	rs11204045
Chromosome Location	chr8:19335101-19335102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10105097	1.00[JPT][hapmap]
rs10503653	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10888165	1.00[JPT][hapmap]
rs11204044	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204046	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11204047	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11204048	0.83[ASN][1000 genomes]
rs11204049	0.84[ASN][1000 genomes]
rs11204050	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11777566	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778734	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783263	1.00[JPT][hapmap]
rs11786904	0.89[ASN][1000 genomes]
rs12155539	0.88[JPT][hapmap]
rs12682196	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13250181	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13261442	1.00[JPT][hapmap]
rs13261732	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13261824	0.88[JPT][hapmap]
rs13265751	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13266857	1.00[JPT][hapmap]
rs13267265	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13267569	0.89[ASN][1000 genomes]
rs13267801	0.89[ASN][1000 genomes]
rs13275706	0.89[ASN][1000 genomes]
rs13276417	1.00[JPT][hapmap]
rs17128525	1.00[JPT][hapmap]
rs17479777	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3185	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3923920	1.00[JPT][hapmap]
rs4072131	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs4244451	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4244452	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244453	1.00[JPT][hapmap]
rs4292704	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4311666	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317590	1.00[JPT][hapmap]
rs4319111	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4391455	0.86[ASN][1000 genomes]
rs4413788	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4427190	0.88[JPT][hapmap]
rs4442162	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4442163	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4455848	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4483172	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4484715	1.00[JPT][hapmap]
rs4486225	0.88[JPT][hapmap]
rs4513991	0.84[ASN][1000 genomes]
rs4524812	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540423	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4554481	1.00[JPT][hapmap]
rs4599829	1.00[JPT][hapmap]
rs4614013	0.84[ASN][1000 genomes]
rs4631482	0.85[ASN][1000 genomes]
rs4921646	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4921647	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4921648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4921649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4921651	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4921652	0.86[ASN][1000 genomes]
rs4921653	1.00[JPT][hapmap]
rs4921654	1.00[JPT][hapmap]
rs4921656	1.00[JPT][hapmap]
rs4921657	1.00[JPT][hapmap]
rs4922030	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs4922034	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4922035	0.89[ASN][1000 genomes]
rs4922036	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4922037	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4922038	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4922039	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4922041	0.84[ASN][1000 genomes]
rs4922044	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4922045	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4922046	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4922047	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4922048	1.00[JPT][hapmap]
rs4922049	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs5013219	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586836	0.98[ASN][1000 genomes]
rs6586837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586838	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586839	1.00[JPT][hapmap]
rs6586840	1.00[JPT][hapmap]
rs6984449	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6984644	1.00[JPT][hapmap]
rs6986388	0.89[ASN][1000 genomes]
rs6991941	1.00[JPT][hapmap]
rs6994352	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6998334	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6999542	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7002357	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7005075	1.00[JPT][hapmap]
rs7006155	0.89[ASN][1000 genomes]
rs7011587	0.82[ASN][1000 genomes]
rs7017776	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7460541	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7464357	0.85[ASN][1000 genomes]
rs7464358	0.85[ASN][1000 genomes]
rs7816777	1.00[JPT][hapmap]
rs7818691	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7828025	0.88[JPT][hapmap]
rs7830404	1.00[JPT][hapmap]
rs7836239	0.87[ASN][1000 genomes]
rs7839041	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9644631	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015395	chr8:18489538-19370258	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv429907	chr8:18578720-19398220	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv949745	chr8:18826830-19363963	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1016482	chr8:18834807-19339487	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	esv3693374	chr8:19241970-19359184	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
11	nsv890623	chr8:19307051-19383697	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv890624	chr8:19319061-19456270	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19310600-19359600	Weak transcription	Ovary	ovary
2	chr8:19316200-19339200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:19319600-19362800	Weak transcription	Spleen	Spleen
4	chr8:19325800-19335800	Weak transcription	Primary B cells from cord blood	blood
5	chr8:19328000-19337800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:19329000-19335200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:19329000-19335400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:19329000-19335400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr8:19329000-19335600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:19329000-19335600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:19330000-19336200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr8:19330000-19338200	Weak transcription	Placenta	Placenta
13	chr8:19331000-19352800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:19333000-19335200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr8:19333000-19337000	Enhancers	NHDF-Ad	bronchial
16	chr8:19333000-19339400	Enhancers	Primary T cells from cord blood	blood
17	chr8:19333200-19338200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:19333200-19338400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:19333400-19362200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr8:19334200-19339200	Weak transcription	Fetal Thymus	thymus
21	chr8:19334400-19339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:19334600-19347400	Weak transcription	Right Atrium	heart
23	chr8:19334800-19336000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:19334800-19336400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:19334800-19336400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr8:19334800-19337600	Weak transcription	Left Ventricle	heart
27	chr8:19334800-19338600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:19335000-19336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:19335000-19336000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr8:19335000-19336000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr8:19335000-19336200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:19335000-19336200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:19335000-19336200	Strong transcription	A549	lung
34	chr8:19335000-19336400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:19335000-19336400	Weak transcription	NHLF	lung
36	chr8:19335000-19338000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:19335000-19338000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:19335000-19338200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:19335000-19338200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:19335000-19338200	Weak transcription	Aorta	Aorta
41	chr8:19335000-19338200	Weak transcription	Hela-S3	cervix
42	chr8:19335000-19338200	Weak transcription	HSMMtube	muscle
43	chr8:19335000-19338200	Weak transcription	Osteobl	bone
44	chr8:19335000-19338400	Weak transcription	HSMM	muscle
45	chr8:19335000-19339400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links