Variant report

Variant	rs11204049
Chromosome Location	chr8:19351226-19351227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10105097	0.89[ASN][1000 genomes]
rs10503653	0.84[ASN][1000 genomes]
rs10888165	0.88[ASN][1000 genomes]
rs11204044	0.80[ASN][1000 genomes]
rs11204045	0.84[ASN][1000 genomes]
rs11204046	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11204047	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204048	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204050	1.00[ASN][1000 genomes]
rs11204052	0.88[ASN][1000 genomes]
rs11777566	0.84[ASN][1000 genomes]
rs11778734	0.84[ASN][1000 genomes]
rs11780475	0.86[ASN][1000 genomes]
rs11783263	0.88[ASN][1000 genomes]
rs13261442	0.88[ASN][1000 genomes]
rs13265751	0.93[ASN][1000 genomes]
rs13266857	0.88[ASN][1000 genomes]
rs13267265	0.95[ASN][1000 genomes]
rs13267569	0.95[ASN][1000 genomes]
rs13276417	0.88[ASN][1000 genomes]
rs13280711	0.89[ASN][1000 genomes]
rs17128525	0.88[ASN][1000 genomes]
rs17479777	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28671342	0.88[ASN][1000 genomes]
rs3923920	0.88[ASN][1000 genomes]
rs4073790	0.89[ASN][1000 genomes]
rs4073791	0.89[ASN][1000 genomes]
rs4244451	0.83[ASN][1000 genomes]
rs4244452	0.84[ASN][1000 genomes]
rs4244453	0.88[ASN][1000 genomes]
rs4273861	0.86[ASN][1000 genomes]
rs4311666	0.84[ASN][1000 genomes]
rs4317590	0.88[ASN][1000 genomes]
rs4319111	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4339658	0.86[ASN][1000 genomes]
rs4413788	0.91[ASN][1000 genomes]
rs4442163	0.93[ASN][1000 genomes]
rs4455848	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4483172	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4484715	0.89[ASN][1000 genomes]
rs4513991	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4524812	0.84[ASN][1000 genomes]
rs4554481	0.84[ASN][1000 genomes]
rs4599829	0.88[ASN][1000 genomes]
rs4614013	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4631482	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4631483	0.88[ASN][1000 genomes]
rs4921646	0.84[ASN][1000 genomes]
rs4921647	0.84[ASN][1000 genomes]
rs4921648	0.83[ASN][1000 genomes]
rs4921649	0.83[ASN][1000 genomes]
rs4921651	0.93[ASN][1000 genomes]
rs4921652	0.95[ASN][1000 genomes]
rs4921653	0.88[ASN][1000 genomes]
rs4921654	0.88[ASN][1000 genomes]
rs4921655	0.88[ASN][1000 genomes]
rs4921656	0.85[ASN][1000 genomes]
rs4921657	0.89[ASN][1000 genomes]
rs4922034	0.83[ASN][1000 genomes]
rs4922037	0.91[ASN][1000 genomes]
rs4922038	0.96[ASN][1000 genomes]
rs4922039	0.96[ASN][1000 genomes]
rs4922041	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4922044	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4922045	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4922046	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4922047	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4922048	0.88[ASN][1000 genomes]
rs4922049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5013219	0.84[ASN][1000 genomes]
rs6586836	0.83[ASN][1000 genomes]
rs6586837	0.83[ASN][1000 genomes]
rs6586838	0.83[ASN][1000 genomes]
rs6586839	0.88[ASN][1000 genomes]
rs6586840	0.88[ASN][1000 genomes]
rs6984644	0.88[ASN][1000 genomes]
rs6988743	0.89[ASN][1000 genomes]
rs6991941	0.86[ASN][1000 genomes]
rs6994352	0.81[ASN][1000 genomes]
rs6998334	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998991	0.96[ASN][1000 genomes]
rs6999542	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005075	0.88[ASN][1000 genomes]
rs7017776	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73585587	0.83[ASN][1000 genomes]
rs7460541	0.93[ASN][1000 genomes]
rs7464357	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7464358	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7816777	0.85[ASN][1000 genomes]
rs7818691	1.00[ASN][1000 genomes]
rs7828197	0.86[ASN][1000 genomes]
rs7830404	0.88[ASN][1000 genomes]
rs7839041	0.85[ASN][1000 genomes]
rs9644628	0.89[ASN][1000 genomes]
rs9644629	0.89[ASN][1000 genomes]
rs9644630	0.87[ASN][1000 genomes]
rs9644631	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015395	chr8:18489538-19370258	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv429907	chr8:18578720-19398220	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv949745	chr8:18826830-19363963	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv533109	chr8:18845845-19456780	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	esv3693374	chr8:19241970-19359184	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
10	nsv890623	chr8:19307051-19383697	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv890624	chr8:19319061-19456270	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19310600-19359600	Weak transcription	Ovary	ovary
2	chr8:19319600-19362800	Weak transcription	Spleen	Spleen
3	chr8:19331000-19352800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:19333400-19362200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:19338800-19370600	Weak transcription	Esophagus	oesophagus
6	chr8:19339000-19351800	Weak transcription	Primary B cells from cord blood	blood
7	chr8:19339400-19352800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:19340000-19352800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr8:19341400-19354200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:19341800-19351600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:19344000-19351800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:19344400-19351600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:19345200-19353000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:19346400-19357000	Weak transcription	Fetal Lung	lung
15	chr8:19347800-19351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:19348000-19376600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:19348200-19351600	Weak transcription	Lung	lung
18	chr8:19348200-19353200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:19348200-19364000	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:19348200-19367400	Weak transcription	Fetal Brain Female	brain
21	chr8:19348400-19351600	Weak transcription	Left Ventricle	heart
22	chr8:19348400-19351600	Weak transcription	Right Atrium	heart
23	chr8:19348600-19353000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:19348600-19353000	Weak transcription	Placenta	Placenta
25	chr8:19348600-19359000	Weak transcription	Fetal Brain Male	brain
26	chr8:19349400-19352800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr8:19349600-19351400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:19349600-19354000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr8:19349800-19352000	Enhancers	Right Ventricle	heart
30	chr8:19349800-19355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:19350200-19351400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr8:19350200-19352600	Weak transcription	Pancreas	Pancrea
33	chr8:19350200-19353600	Enhancers	Primary T cells from cord blood	blood
34	chr8:19350200-19354200	Weak transcription	A549	lung
35	chr8:19350200-19362800	Weak transcription	Gastric	stomach
36	chr8:19350800-19351400	Enhancers	Brain Anterior Caudate	brain
37	chr8:19351000-19351800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:19351000-19351800	Enhancers	Brain Cingulate Gyrus	brain
39	chr8:19351000-19352000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:19351000-19352000	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr8:19351000-19352200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:19351000-19353800	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr8:19351200-19351800	Enhancers	Brain Angular Gyrus	brain
44	chr8:19351200-19369000	Weak transcription	Primary monocytes fromperipheralblood	blood

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