Variant report

Variant	rs11204144
Chromosome Location	chr8:20829960-20829961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12543958	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17093444	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs60460972	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1024612	chr8:20665835-20837761	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv539527	chr8:20665835-20837761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv890646	chr8:20714686-20843176	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv890647	chr8:20749895-20847332	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv831258	chr8:20754932-20940380	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv2754301	chr8:20823020-20840820	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1025989	chr8:20829412-20865838	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20827600-20831600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:20828600-20830400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:20828600-20831000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:20829200-20830800	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:20829400-20830000	Enhancers	Primary T cells from cord blood	blood
6	chr8:20829400-20830000	Enhancers	Fetal Thymus	thymus
7	chr8:20829400-20830200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:20829400-20830800	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:20829600-20830000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:20829600-20830000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:20829600-20830000	Bivalent Enhancer	Brain Substantia Nigra	brain
12	chr8:20829600-20830600	Enhancers	Brain Anterior Caudate	brain
13	chr8:20829600-20831000	Enhancers	Brain Hippocampus Middle	brain
14	chr8:20829800-20830200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:20829800-20830400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:20829800-20830400	Enhancers	Brain Angular Gyrus	brain
17	chr8:20829800-20830800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:20829800-20831200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links