Variant report

Variant	rs11204866
Chromosome Location	chr1:151621672-151621673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	1:151402394-151411623..1:151618750-151636526	GM12878	blood:
2	chr1:151616584..151619444-chr1:151621230..151623603,2	MCF-7	breast:
3	1:151171193-151178589..1:151618750-151636526	Hela-S3	cervix:
4	1:151592347-151603110..1:151618750-151636526	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000238711	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000206635	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1048694	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10888428	0.83[EUR][1000 genomes]
rs11586679	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1196352	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1196357	0.80[EUR][1000 genomes]
rs1196459	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196464	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196465	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1201651	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1211981	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1308137	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1308139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1308143	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1308145	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1308146	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1308147	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1308148	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1308152	0.83[EUR][1000 genomes]
rs1308158	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1717128	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17641780	0.90[EUR][1000 genomes]
rs1781434	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1891591	0.80[EUR][1000 genomes]
rs2460996	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2489892	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2495392	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2495393	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2495394	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3204344	0.89[EUR][1000 genomes]
rs34718348	0.82[EUR][1000 genomes]
rs35981950	0.82[EUR][1000 genomes]
rs3790512	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6684548	0.93[EUR][1000 genomes]
rs6685067	0.93[EUR][1000 genomes]
rs6687866	0.91[EUR][1000 genomes]
rs6702842	0.83[EUR][1000 genomes]
rs7534887	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2843	chr1:151600069-151644709	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151586400-151622200	Weak transcription	Fetal Thymus	thymus
2	chr1:151586400-151626600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:151587600-151640600	Weak transcription	Fetal Brain Male	brain
4	chr1:151588000-151626600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
6	chr1:151591000-151630800	Weak transcription	Fetal Kidney	kidney
7	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:151592000-151622600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:151592600-151633800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:151592800-151630600	Weak transcription	Hela-S3	cervix
11	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
12	chr1:151601400-151629800	Weak transcription	Thymus	Thymus
13	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
14	chr1:151606000-151621800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:151606800-151630800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:151608200-151630600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:151610200-151633800	Weak transcription	HUVEC	blood vessel
18	chr1:151610400-151626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:151610600-151625800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:151610600-151626000	Weak transcription	Spleen	Spleen
21	chr1:151610600-151626600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:151610600-151630600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:151610600-151631000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:151610600-151665000	Weak transcription	Lung	lung
26	chr1:151610800-151631000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:151611000-151625800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:151611400-151630400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:151611400-151630400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:151611400-151631000	Weak transcription	Brain Anterior Caudate	brain
31	chr1:151611600-151626600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr1:151611600-151628000	Weak transcription	Brain Substantia Nigra	brain
33	chr1:151611600-151633000	Weak transcription	Brain Hippocampus Middle	brain
34	chr1:151611600-151634200	Weak transcription	Psoas Muscle	Psoas
35	chr1:151611600-151637600	Weak transcription	Fetal Heart	heart
36	chr1:151611600-151639800	Weak transcription	K562	blood
37	chr1:151611600-151640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:151611600-151643800	Weak transcription	Pancreas	Pancrea
39	chr1:151611600-151668200	Weak transcription	Gastric	stomach
40	chr1:151611800-151626600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr1:151611800-151630400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:151612000-151625800	Weak transcription	Adipose Nuclei	Adipose
43	chr1:151612000-151626600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr1:151612000-151627200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:151612200-151621800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:151612200-151630800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:151612400-151634600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:151612600-151621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:151612600-151621800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr1:151612600-151627600	Weak transcription	Liver	Liver

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