Variant report

Variant	rs2489892
Chromosome Location	chr1:151677014-151677015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151511777..151514221-chr1:151676659..151678306,2	MCF-7	breast:
2	chr1:151668533..151670449-chr1:151674606..151677478,3	MCF-7	breast:
3	chr1:151430268..151431777-chr1:151675061..151677444,2	MCF-7	breast:
4	chr1:151671136..151674505-chr1:151674889..151678422,3	K562	blood:
5	chr1:151671136..151673707-chr1:151674889..151677650,3	K562	blood:

Variant related genes	Relation type
ENSG00000143367	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000143442	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1048694	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10888428	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11204866	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11586679	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1196352	0.81[EUR][1000 genomes]
rs1196459	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196464	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1196465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1201651	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1211981	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1308137	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1308139	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1308143	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1308145	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1308146	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1308147	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1308148	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1308152	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1308158	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1717128	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17641780	0.97[EUR][1000 genomes]
rs1781434	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2460996	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2495392	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2495393	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2495394	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3204344	0.98[EUR][1000 genomes]
rs35981950	0.83[EUR][1000 genomes]
rs3790512	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6684548	0.95[EUR][1000 genomes]
rs6685067	0.95[EUR][1000 genomes]
rs6687866	0.98[EUR][1000 genomes]
rs6702842	0.81[EUR][1000 genomes]
rs7534887	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:151666000-151685400	Weak transcription	A549	lung
5	chr1:151667000-151687400	Weak transcription	K562	blood
6	chr1:151667800-151686000	Weak transcription	HMEC	breast
7	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
8	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
9	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:151672000-151678000	Weak transcription	Stomach Mucosa	stomach
11	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
13	chr1:151672800-151678400	Weak transcription	Colonic Mucosa	Colon
14	chr1:151673600-151678600	Strong transcription	Brain Germinal Matrix	brain
15	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
16	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
18	chr1:151674000-151677200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:151674000-151677400	Weak transcription	Osteobl	bone
20	chr1:151674000-151677800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:151674000-151677800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr1:151674000-151678000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:151674000-151678600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:151674000-151682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:151674000-151685400	Weak transcription	Gastric	stomach
26	chr1:151674200-151677600	Weak transcription	NHLF	lung
27	chr1:151674200-151677800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr1:151674200-151679800	Weak transcription	Right Ventricle	heart
29	chr1:151674200-151683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:151674200-151683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr1:151674400-151677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:151674400-151677600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr1:151674400-151677800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:151674400-151679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr1:151674600-151677400	Weak transcription	Adipose Nuclei	Adipose
37	chr1:151674600-151677800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:151674600-151678000	Weak transcription	HSMM	muscle
39	chr1:151674600-151678200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:151674600-151678400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:151674600-151678600	Weak transcription	Lung	lung
42	chr1:151674600-151681800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:151674600-151682400	Weak transcription	Brain Substantia Nigra	brain
44	chr1:151674600-151682600	Weak transcription	Brain Hippocampus Middle	brain
45	chr1:151674600-151683200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr1:151674600-151683200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:151674600-151685200	Weak transcription	Fetal Lung	lung
48	chr1:151674600-151686000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:151674800-151677200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr1:151674800-151677200	Weak transcription	Left Ventricle	heart

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