Variant report

Variant	rs11204871
Chromosome Location	chr1:151665046-151665047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151664863..151666214-chr1:151706833..151708161,20	MCF-7	breast:
2	chr1:151664791..151666370-chr1:151707222..151708158,5	MCF-7	breast:
3	chr1:151510443..151513017-chr1:151663808..151665952,2	MCF-7	breast:
4	chr1:151659536..151662193-chr1:151663532..151665631,2	MCF-7	breast:
5	chr1:151664163..151666022-chr1:151807533..151809053,2	MCF-7	breast:
6	chr1:151546166..151548100-chr1:151663525..151665692,2	K562	blood:
7	chr1:151665022..151667195-chr1:151671902..151674040,3	K562	blood:
8	chr1:151663513..151665875-chr1:151762843..151764618,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143367	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000182134	Chromatin interaction

rs_ID	r²[population]
rs1045298	1.00[LWK][hapmap]
rs16833597	1.00[CHB][hapmap]
rs17582155	1.00[CHB][hapmap]
rs4994617	1.00[CHB][hapmap];1.00[MEX][hapmap]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151611600-151668200	Weak transcription	Gastric	stomach
4	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
7	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
9	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
11	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:151644200-151665200	Weak transcription	Brain Substantia Nigra	brain
13	chr1:151644800-151665200	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:151646600-151665800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
16	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
17	chr1:151653600-151665200	Weak transcription	NHDF-Ad	bronchial
18	chr1:151654600-151666200	Weak transcription	HMEC	breast
19	chr1:151654800-151665200	Weak transcription	NH-A	brain
20	chr1:151654800-151665200	Weak transcription	NHLF	lung
21	chr1:151654800-151666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:151655000-151665800	Weak transcription	HUVEC	blood vessel
24	chr1:151657200-151665400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
26	chr1:151659200-151667600	Weak transcription	Fetal Brain Male	brain
27	chr1:151659600-151665400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:151662000-151665200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:151662000-151670400	Weak transcription	Fetal Heart	heart
32	chr1:151662800-151665200	Genic enhancers	Monocytes-CD14+_RO01746	blood
33	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
34	chr1:151663200-151667200	Strong transcription	Colonic Mucosa	Colon
35	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr1:151664200-151672800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
40	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:151664400-151665400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:151664400-151666600	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr1:151664400-151668800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:151664400-151672200	Strong transcription	Fetal Intestine Small	intestine
46	chr1:151664400-151672400	Strong transcription	Fetal Intestine Large	intestine
47	chr1:151664400-151672400	Strong transcription	Thymus	Thymus
48	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle

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