Variant report

Variant	rs17582155
Chromosome Location	chr1:151804213-151804214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151225447..151227979-chr1:151803297..151804971,2	K562	blood:
2	chr1:151762059..151766604-chr1:151800169..151809078,15	MCF-7	breast:
3	chr1:151760926..151765128-chr1:151802888..151806720,6	MCF-7	breast:
4	chr1:151512695..151514361-chr1:151804056..151806637,3	MCF-7	breast:
5	chr1:151735081..151737738-chr1:151803314..151806226,2	MCF-7	breast:
6	chr1:151510723..151515515-chr1:151802413..151805096,5	MCF-7	breast:
7	chr1:151731676..151737592-chr1:151803957..151806544,6	MCF-7	breast:
8	chr1:151803084..151806304-chr1:151962981..151966430,4	MCF-7	breast:
9	chr1:151804012..151806616-chr1:151810661..151813276,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225556	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000159352	Chromatin interaction
ENSG00000197747	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000143450	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11204871	1.00[CHB][hapmap]
rs16833597	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151798400-151807000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr1:151798800-151804400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:151799000-151807800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:151800000-151806400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:151800400-151804800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:151800600-151804400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:151801200-151804400	Enhancers	Dnd41	blood
8	chr1:151801200-151805000	Weak transcription	Brain Angular Gyrus	brain
9	chr1:151801200-151807400	Enhancers	Primary T cells from cord blood	blood
10	chr1:151801200-151808000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:151801800-151805200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:151802000-151805000	Weak transcription	Fetal Heart	heart
13	chr1:151802000-151809400	Enhancers	Fetal Thymus	thymus
14	chr1:151802200-151804800	Weak transcription	Fetal Brain Female	brain
15	chr1:151802200-151805200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:151802200-151807000	Enhancers	Thymus	Thymus
17	chr1:151802400-151804600	Weak transcription	Fetal Kidney	kidney
18	chr1:151802400-151805800	Flanking Active TSS	Hela-S3	cervix
19	chr1:151802400-151808000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:151802400-151810400	Weak transcription	Right Atrium	heart
21	chr1:151802600-151804800	Weak transcription	Brain Anterior Caudate	brain
22	chr1:151802600-151805000	Weak transcription	Brain Hippocampus Middle	brain
23	chr1:151802600-151805400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:151802800-151804600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr1:151802800-151804600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr1:151802800-151804800	Weak transcription	Brain Substantia Nigra	brain
27	chr1:151802800-151804800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:151802800-151805000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:151802800-151811000	Enhancers	Placenta	Placenta
30	chr1:151803000-151804600	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr1:151803000-151804800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr1:151803200-151804400	Active TSS	Liver	Liver
33	chr1:151803200-151804400	Active TSS	Gastric	stomach
34	chr1:151803200-151804400	Active TSS	Pancreas	Pancrea
35	chr1:151803200-151805200	Weak transcription	Fetal Brain Male	brain
36	chr1:151803200-151805800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr1:151803400-151804400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:151803400-151804400	Bivalent/Poised TSS	Fetal Stomach	stomach
39	chr1:151803400-151804400	Active TSS	Psoas Muscle	Psoas
40	chr1:151803400-151804400	Active TSS	Stomach Mucosa	stomach
41	chr1:151803400-151804600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr1:151803400-151804600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:151803400-151805400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:151803400-151805600	Enhancers	Adipose Nuclei	Adipose
45	chr1:151803400-151807000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:151803600-151804400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr1:151803600-151804400	Flanking Active TSS	Esophagus	oesophagus
48	chr1:151803600-151804400	Flanking Active TSS	Fetal Muscle Trunk	muscle
49	chr1:151803600-151804400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr1:151803600-151806000	Weak transcription	Primary B cells from cord blood	blood

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