Variant report

Variant	rs112069647
Chromosome Location	chr6:88033406-88033407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823771	chr6:88032762-88039447	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88039600	Weak transcription	GM12878-XiMat	blood
2	chr6:88033000-88043600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:88033000-88043600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:88033000-88043600	Weak transcription	Spleen	Spleen
5	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:88033200-88033800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:88033200-88042800	Weak transcription	Fetal Thymus	thymus
9	chr6:88033200-88043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:88033200-88043400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:88033200-88043600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:88033200-88043600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:88033200-88043600	Weak transcription	Pancreas	Pancrea
14	chr6:88033200-88045200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:88033200-88045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:88033200-88048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:88033200-88056400	Weak transcription	Liver	Liver
18	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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