Variant report

Variant	rs11206974
Chromosome Location	chr1:57571463-57571464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57571162..57573727-chr1:57574083..57575763,2	MCF-7	breast:
2	chr1:57571164..57573212-chr1:57625317..57627807,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11799770	1.00[EUR][1000 genomes]
rs11807035	1.00[EUR][1000 genomes]
rs11808294	1.00[EUR][1000 genomes]
rs11808305	1.00[EUR][1000 genomes]
rs12072428	1.00[EUR][1000 genomes]
rs13374012	1.00[EUR][1000 genomes]
rs35124225	1.00[EUR][1000 genomes]
rs59285318	1.00[EUR][1000 genomes]
rs6677976	1.00[EUR][1000 genomes]
rs6684103	1.00[EUR][1000 genomes]
rs6684287	1.00[EUR][1000 genomes]
rs6688025	1.00[EUR][1000 genomes]
rs6697460	1.00[EUR][1000 genomes]
rs706352	1.00[EUR][1000 genomes]
rs74074905	1.00[EUR][1000 genomes]
rs7529992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv428752	chr1:57455083-57605082	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57551400-57622000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57567400-57576800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57569200-57571800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:57569200-57574200	Weak transcription	Right Atrium	heart
5	chr1:57569400-57573600	Weak transcription	Ovary	ovary
6	chr1:57569400-57574400	Weak transcription	Left Ventricle	heart
7	chr1:57570400-57571600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:57570400-57572000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:57570400-57572200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:57570600-57571800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:57570600-57571800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:57570600-57572200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:57570600-57572800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:57570800-57571600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:57570800-57571600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:57570800-57574200	Weak transcription	Fetal Heart	heart
17	chr1:57571000-57571600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:57571200-57571600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:57571200-57571800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:57571200-57572400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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