Variant report

Variant	rs11807035
Chromosome Location	chr1:57409158-57409159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11206974	1.00[EUR][1000 genomes]
rs11799770	1.00[EUR][1000 genomes]
rs11802385	1.00[AMR][1000 genomes]
rs11808294	1.00[EUR][1000 genomes]
rs11808305	1.00[EUR][1000 genomes]
rs12072428	1.00[EUR][1000 genomes]
rs12116668	0.82[YRI][hapmap]
rs13374012	1.00[EUR][1000 genomes]
rs17114468	1.00[AMR][1000 genomes]
rs35124225	1.00[EUR][1000 genomes]
rs58164188	1.00[AMR][1000 genomes]
rs6677976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684103	1.00[EUR][1000 genomes]
rs6684287	1.00[EUR][1000 genomes]
rs6688025	1.00[EUR][1000 genomes]
rs706352	1.00[EUR][1000 genomes]
rs7529992	1.00[EUR][1000 genomes]
rs927214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57395600-57410000	Strong transcription	Liver	Liver
2	chr1:57405200-57418200	Weak transcription	Pancreas	Pancrea
3	chr1:57405400-57414000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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