Variant report

Variant	rs11206978
Chromosome Location	chr1:57626900-57626901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57571164..57573212-chr1:57625317..57627807,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10465835	0.87[ASN][1000 genomes]
rs11206989	0.87[ASN][1000 genomes]
rs11206992	0.87[ASN][1000 genomes]
rs12565136	0.87[ASN][1000 genomes]
rs155293	0.95[ASN][1000 genomes]
rs1857739	0.87[ASN][1000 genomes]
rs1857741	0.87[ASN][1000 genomes]
rs1857742	0.87[ASN][1000 genomes]
rs7530049	0.87[ASN][1000 genomes]
rs7530255	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57621400-57627800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:57622000-57628000	Weak transcription	Pancreas	Pancrea
3	chr1:57623200-57635400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:57623800-57629000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:57624000-57644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:57624200-57628600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:57624200-57628800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:57624400-57628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:57624400-57629000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:57624600-57628400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:57624800-57627600	Weak transcription	Fetal Brain Female	brain
12	chr1:57624800-57628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:57625600-57627000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:57626000-57628200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:57626000-57628600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:57626200-57627200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:57626200-57627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:57626400-57627800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:57626400-57628000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:57626400-57628000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:57626400-57629000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:57626400-57629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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