Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10465835	1.00[ASN][1000 genomes]
rs10489464	0.92[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11206978	0.87[ASN][1000 genomes]
rs11206981	0.85[CHB][hapmap]
rs11206988	0.97[AFR][1000 genomes]
rs11206989	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11206991	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs11206992	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12026905	0.86[AFR][1000 genomes]
rs12041971	1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes]
rs12077019	0.99[AFR][1000 genomes]
rs155291	0.85[CHB][hapmap]
rs155293	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17115247	0.92[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1857739	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1857741	1.00[ASN][1000 genomes]
rs1857742	1.00[ASN][1000 genomes]
rs636943	0.85[CHB][hapmap]
rs7530049	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs7530255	1.00[ASN][1000 genomes]
rs7542527	0.85[AFR][1000 genomes]
rs9970799	1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57624000-57644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57632000-57637400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:57632000-57637800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:57633400-57639800	Weak transcription	Fetal Intestine Large	intestine
5	chr1:57636000-57637800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:57636400-57637600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:57636400-57637800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:57636400-57637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:57636600-57637800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:57636600-57638000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:57636600-57638200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:57636600-57638800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:57636600-57641400	Weak transcription	Fetal Intestine Small	intestine
14	chr1:57636800-57637400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:57636800-57637400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr1:57636800-57637800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:57637000-57637200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr1:57637000-57637600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:57637000-57638000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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