Variant report

Variant	rs11206981
Chromosome Location	chr1:57627548-57627549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57571164..57573212-chr1:57625317..57627807,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11206975	1.00[CEU][hapmap]
rs11206979	1.00[MEX][hapmap]
rs11206989	0.82[CHB][hapmap]
rs11206992	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12032549	1.00[CEU][hapmap]
rs12059674	1.00[MEX][hapmap]
rs12408256	1.00[CEU][hapmap]
rs12562392	1.00[CEU][hapmap]
rs12562394	1.00[CEU][hapmap]
rs12562609	1.00[CEU][hapmap]
rs12562930	1.00[CEU][hapmap]
rs12563280	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12564278	1.00[CEU][hapmap]
rs12564961	1.00[CEU][hapmap]
rs12565136	0.85[CHB][hapmap]
rs12566131	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12566320	1.00[CEU][hapmap]
rs12567335	1.00[CEU][hapmap]
rs12567531	1.00[CEU][hapmap]
rs12567904	1.00[CEU][hapmap]
rs12568148	1.00[CEU][hapmap]
rs12568862	1.00[CEU][hapmap]
rs12568992	1.00[JPT][hapmap]
rs155291	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs155293	0.85[CHB][hapmap]
rs17115023	1.00[CEU][hapmap]
rs17115030	1.00[CEU][hapmap]
rs17115105	1.00[CEU][hapmap]
rs17115108	1.00[CEU][hapmap]
rs17115146	1.00[CEU][hapmap]
rs17115155	1.00[CEU][hapmap]
rs17115212	1.00[MEX][hapmap]
rs17115222	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17115397	1.00[CEU][hapmap]
rs17115580	1.00[CEU][hapmap]
rs17115587	1.00[CEU][hapmap]
rs17420013	1.00[CEU][hapmap]
rs17420216	1.00[CEU][hapmap]
rs17421219	1.00[CEU][hapmap]
rs17421839	1.00[CEU][hapmap]
rs17422039	1.00[CEU][hapmap]
rs17455073	1.00[CEU][hapmap]
rs17455469	1.00[CEU][hapmap]
rs17455616	1.00[CEU][hapmap]
rs17455728	1.00[CEU][hapmap]
rs17455840	1.00[CEU][hapmap]
rs59459799	0.99[AFR][1000 genomes]
rs61765333	0.87[EUR][1000 genomes]
rs61767494	0.87[EUR][1000 genomes]
rs61767495	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767496	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767497	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61767499	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61767500	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61767501	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61767502	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61767509	0.87[EUR][1000 genomes]
rs61767510	0.87[EUR][1000 genomes]
rs61767511	0.87[EUR][1000 genomes]
rs61767512	0.87[EUR][1000 genomes]
rs636943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6697173	1.00[CEU][hapmap]
rs728719	1.00[CEU][hapmap]
rs7530049	0.85[CHB][hapmap]
rs9651187	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57621400-57627800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:57622000-57628000	Weak transcription	Pancreas	Pancrea
3	chr1:57623200-57635400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:57623800-57629000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:57624000-57644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:57624200-57628600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:57624200-57628800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:57624400-57628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:57624400-57629000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:57624600-57628400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:57624800-57627600	Weak transcription	Fetal Brain Female	brain
12	chr1:57624800-57628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:57626000-57628200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:57626000-57628600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:57626200-57627800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:57626400-57627800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:57626400-57628000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:57626400-57628000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:57626400-57629000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:57626400-57629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:57627000-57628600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:57627000-57629400	Enhancers	Fetal Brain Male	brain
23	chr1:57627000-57629800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:57627200-57628600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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