Variant report

Variant	rs12566131
Chromosome Location	chr1:57667249-57667250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11206975	1.00[CEU][hapmap]
rs11206981	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12032549	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs12408256	1.00[CEU][hapmap]
rs12561986	1.00[EUR][1000 genomes]
rs12562392	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12562394	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs12562555	1.00[JPT][hapmap]
rs12562609	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12562847	1.00[EUR][1000 genomes]
rs12562930	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12563280	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12563894	1.00[EUR][1000 genomes]
rs12564258	1.00[JPT][hapmap]
rs12564278	1.00[CEU][hapmap]
rs12564961	1.00[CEU][hapmap]
rs12566162	1.00[JPT][hapmap]
rs12566320	1.00[CEU][hapmap]
rs12567335	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12567531	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12567904	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs12567967	1.00[EUR][1000 genomes]
rs12568148	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12568862	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12568928	1.00[EUR][1000 genomes]
rs12568979	1.00[EUR][1000 genomes]
rs12568992	1.00[JPT][hapmap]
rs12569224	1.00[EUR][1000 genomes]
rs155291	0.85[CHB][hapmap]
rs17115023	1.00[CEU][hapmap]
rs17115030	1.00[CEU][hapmap]
rs17115105	1.00[CEU][hapmap]
rs17115108	1.00[CEU][hapmap]
rs17115146	1.00[CEU][hapmap]
rs17115155	1.00[CEU][hapmap]
rs17115222	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17115397	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17115441	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17115445	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17115580	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs17115587	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17420013	1.00[CEU][hapmap]
rs17420216	1.00[CEU][hapmap]
rs17421219	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17421839	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17422039	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17455073	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17455469	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17455616	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17455728	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17455840	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs197599	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs197606	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs197623	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs34736592	0.98[ASN][1000 genomes]
rs41286864	0.86[EUR][1000 genomes]
rs59015063	1.00[ASN][1000 genomes]
rs59762173	1.00[EUR][1000 genomes]
rs61765266	0.86[EUR][1000 genomes]
rs61765267	0.86[EUR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61765581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765582	0.88[ASN][1000 genomes]
rs61765586	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765589	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765590	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765591	1.00[EUR][1000 genomes]
rs61765592	1.00[EUR][1000 genomes]
rs61765593	1.00[EUR][1000 genomes]
rs61765594	1.00[EUR][1000 genomes]
rs61765595	1.00[EUR][1000 genomes]
rs61765623	1.00[EUR][1000 genomes]
rs61767363	1.00[EUR][1000 genomes]
rs61767364	1.00[EUR][1000 genomes]
rs61767365	1.00[EUR][1000 genomes]
rs61767367	1.00[EUR][1000 genomes]
rs61767368	1.00[EUR][1000 genomes]
rs61767384	1.00[EUR][1000 genomes]
rs61767385	1.00[EUR][1000 genomes]
rs61767386	1.00[EUR][1000 genomes]
rs61767387	1.00[EUR][1000 genomes]
rs61767388	1.00[EUR][1000 genomes]
rs61767389	1.00[EUR][1000 genomes]
rs61767390	1.00[EUR][1000 genomes]
rs61767392	1.00[EUR][1000 genomes]
rs61767393	1.00[EUR][1000 genomes]
rs61767394	1.00[EUR][1000 genomes]
rs61767395	1.00[EUR][1000 genomes]
rs61767396	1.00[EUR][1000 genomes]
rs61767401	1.00[EUR][1000 genomes]
rs61767411	1.00[EUR][1000 genomes]
rs61767412	1.00[EUR][1000 genomes]
rs61767495	0.91[AMR][1000 genomes]
rs61767496	0.91[AMR][1000 genomes]
rs61767497	0.91[AMR][1000 genomes]
rs61767499	0.91[AMR][1000 genomes]
rs61767500	0.91[AMR][1000 genomes]
rs61767501	0.91[AMR][1000 genomes]
rs61767502	0.91[AMR][1000 genomes]
rs61767509	1.00[AMR][1000 genomes]
rs61767510	1.00[AMR][1000 genomes]
rs61767511	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61767512	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61767513	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636943	0.86[CHB][hapmap]
rs6587766	1.00[JPT][hapmap]
rs6695086	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697173	1.00[CEU][hapmap]
rs728719	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57657400-57670200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57663600-57669800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:57664600-57667600	Weak transcription	Fetal Brain Male	brain
5	chr1:57664600-57678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:57665200-57670400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:57665400-57669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:57665600-57671600	Weak transcription	Fetal Heart	heart
9	chr1:57666600-57668800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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