Variant report

Variant	rs12562609
Chromosome Location	chr1:57732074-57732075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57729389..57732670-chr1:57736869..57739478,3	K562	blood:
2	chr1:57730131..57732253-chr1:57733459..57735865,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11206975	1.00[CEU][hapmap]
rs11206981	1.00[CEU][hapmap]
rs12032549	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12408256	1.00[CEU][hapmap]
rs12561986	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12562392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12562394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12562555	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12562847	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12562930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12563280	1.00[CEU][hapmap]
rs12563894	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12564258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12564278	1.00[CEU][hapmap]
rs12564961	1.00[CEU][hapmap]
rs12565921	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12566131	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12566162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12566320	1.00[CEU][hapmap]
rs12567335	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12567531	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12567904	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12567967	0.80[AMR][1000 genomes]
rs12568148	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12568708	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12568928	0.80[AMR][1000 genomes]
rs12568979	0.80[AMR][1000 genomes]
rs12568992	1.00[JPT][hapmap]
rs12569224	0.80[AMR][1000 genomes]
rs17115023	1.00[CEU][hapmap]
rs17115030	1.00[CEU][hapmap]
rs17115105	1.00[CEU][hapmap]
rs17115108	1.00[CEU][hapmap]
rs17115146	1.00[CEU][hapmap]
rs17115155	1.00[CEU][hapmap]
rs17115222	1.00[CEU][hapmap]
rs17115397	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17115441	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17115445	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17115580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17115587	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17420013	1.00[CEU][hapmap]
rs17420216	1.00[CEU][hapmap]
rs17421219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17421839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17422039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17455073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17455616	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17455728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17455840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs197599	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs197606	1.00[JPT][hapmap]
rs197623	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs59762173	0.92[ASN][1000 genomes]
rs61765594	0.80[AMR][1000 genomes]
rs61765595	0.80[AMR][1000 genomes]
rs61765623	0.80[AMR][1000 genomes]
rs61765627	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765630	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765631	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765632	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765653	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765654	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765655	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765656	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765658	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767362	0.90[ASN][1000 genomes]
rs61767363	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767364	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767365	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767367	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767368	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767384	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767385	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767386	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767387	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767388	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767389	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767390	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767392	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767393	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61767394	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767395	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767396	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767398	0.87[ASN][1000 genomes]
rs61767399	0.87[ASN][1000 genomes]
rs61767400	0.83[ASN][1000 genomes]
rs61767401	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767411	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767412	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6587766	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6697173	1.00[CEU][hapmap]
rs728719	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2754702	chr1:57716116-57743244	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57728600-57733200	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57729400-57736400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57731200-57732200	Enhancers	Fetal Intestine Small	intestine

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