Variant report

Variant	rs17115445
Chromosome Location	chr1:57707850-57707851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12032549	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12561986	0.88[ASN][1000 genomes]
rs12562392	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12562394	0.85[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12562555	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12562609	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12562847	0.81[ASN][1000 genomes]
rs12562930	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12563894	0.85[ASN][1000 genomes]
rs12564258	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12565921	0.95[ASN][1000 genomes]
rs12566131	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12566162	0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs12567335	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12567531	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12567904	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12568148	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12568708	0.95[ASN][1000 genomes]
rs12568862	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12568992	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169100	1.00[TSI][hapmap]
rs17115397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115441	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115580	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs17115587	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17421219	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17421839	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17422039	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17455073	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17455469	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17455728	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17455840	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs197599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs197606	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs197623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs197628	1.00[TSI][hapmap]
rs59762173	0.88[ASN][1000 genomes]
rs61765624	0.83[ASN][1000 genomes]
rs61765627	1.00[ASN][1000 genomes]
rs61765630	1.00[ASN][1000 genomes]
rs61765631	1.00[ASN][1000 genomes]
rs61765632	1.00[ASN][1000 genomes]
rs61765653	1.00[ASN][1000 genomes]
rs61765654	1.00[ASN][1000 genomes]
rs61765655	1.00[ASN][1000 genomes]
rs61765656	0.95[ASN][1000 genomes]
rs61765658	0.95[ASN][1000 genomes]
rs61765659	0.95[ASN][1000 genomes]
rs61767360	0.95[ASN][1000 genomes]
rs61767361	0.93[ASN][1000 genomes]
rs61767362	0.85[ASN][1000 genomes]
rs61767363	0.88[ASN][1000 genomes]
rs61767364	0.88[ASN][1000 genomes]
rs61767365	0.88[ASN][1000 genomes]
rs61767367	0.88[ASN][1000 genomes]
rs61767368	0.88[ASN][1000 genomes]
rs61767384	0.88[ASN][1000 genomes]
rs61767385	0.88[ASN][1000 genomes]
rs61767386	0.88[ASN][1000 genomes]
rs61767387	0.88[ASN][1000 genomes]
rs61767388	0.88[ASN][1000 genomes]
rs61767389	0.88[ASN][1000 genomes]
rs61767390	0.88[ASN][1000 genomes]
rs61767392	0.88[ASN][1000 genomes]
rs61767394	0.85[ASN][1000 genomes]
rs61767395	0.85[ASN][1000 genomes]
rs61767396	0.85[ASN][1000 genomes]
rs61767398	0.83[ASN][1000 genomes]
rs61767399	0.83[ASN][1000 genomes]
rs61767401	0.81[ASN][1000 genomes]
rs61767411	0.81[ASN][1000 genomes]
rs6587766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57705200-57712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57707400-57708200	Enhancers	Fetal Intestine Large	intestine

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