Variant report

Variant	rs6587766
Chromosome Location	chr1:57708088-57708089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57699019..57701409-chr1:57708056..57710279,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12060287	1.00[CEU][hapmap]
rs12561986	0.80[ASN][1000 genomes]
rs12562392	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12562555	1.00[JPT][hapmap]
rs12562609	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12562930	1.00[JPT][hapmap]
rs12564258	1.00[JPT][hapmap]
rs12565921	0.87[ASN][1000 genomes]
rs12566131	1.00[JPT][hapmap]
rs12566162	1.00[JPT][hapmap]
rs12567335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12567531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12567904	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12568148	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12568708	0.87[ASN][1000 genomes]
rs12568862	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12568992	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1394396	1.00[CEU][hapmap]
rs17115397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17115445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17115587	1.00[JPT][hapmap]
rs17421219	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17421839	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17422039	1.00[JPT][hapmap]
rs17455073	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17455469	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17455728	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17455840	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs197599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs197606	1.00[JPT][hapmap]
rs197623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59762173	0.80[ASN][1000 genomes]
rs61765627	0.93[ASN][1000 genomes]
rs61765630	0.93[ASN][1000 genomes]
rs61765631	0.93[ASN][1000 genomes]
rs61765632	0.93[ASN][1000 genomes]
rs61765653	0.93[ASN][1000 genomes]
rs61765654	0.93[ASN][1000 genomes]
rs61765655	0.93[ASN][1000 genomes]
rs61765656	0.87[ASN][1000 genomes]
rs61765658	0.87[ASN][1000 genomes]
rs61765659	0.87[ASN][1000 genomes]
rs61767360	0.87[ASN][1000 genomes]
rs61767361	0.85[ASN][1000 genomes]
rs61767362	0.83[ASN][1000 genomes]
rs61767363	0.80[ASN][1000 genomes]
rs61767364	0.80[ASN][1000 genomes]
rs61767365	0.80[ASN][1000 genomes]
rs61767367	0.80[ASN][1000 genomes]
rs61767368	0.80[ASN][1000 genomes]
rs61767384	0.80[ASN][1000 genomes]
rs61767385	0.80[ASN][1000 genomes]
rs61767386	0.80[ASN][1000 genomes]
rs61767387	0.80[ASN][1000 genomes]
rs61767388	0.80[ASN][1000 genomes]
rs61767389	0.80[ASN][1000 genomes]
rs61767390	0.80[ASN][1000 genomes]
rs61767392	0.80[ASN][1000 genomes]
rs61767398	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57705200-57712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57707400-57708200	Enhancers	Fetal Intestine Large	intestine

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