Variant report

Variant	rs59762173
Chromosome Location	chr1:57742524-57742525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs12032549	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12561986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562394	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562555	0.90[ASN][1000 genomes]
rs12562609	0.92[ASN][1000 genomes]
rs12562847	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12562930	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12563894	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12564258	0.90[ASN][1000 genomes]
rs12565921	0.92[ASN][1000 genomes]
rs12566131	1.00[EUR][1000 genomes]
rs12566162	0.90[ASN][1000 genomes]
rs12567335	0.88[ASN][1000 genomes]
rs12567531	0.88[ASN][1000 genomes]
rs12567904	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567967	1.00[EUR][1000 genomes]
rs12568148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568708	0.92[ASN][1000 genomes]
rs12568862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568928	1.00[EUR][1000 genomes]
rs12568979	1.00[EUR][1000 genomes]
rs12569224	1.00[EUR][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs17115397	1.00[EUR][1000 genomes]
rs17115441	0.88[ASN][1000 genomes]
rs17115445	0.88[ASN][1000 genomes]
rs17115580	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17115587	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17421219	0.92[ASN][1000 genomes]
rs17421839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17422039	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17455073	0.92[ASN][1000 genomes]
rs17455469	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455616	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17455728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455840	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41515244	0.95[AFR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	1.00[EUR][1000 genomes]
rs61765563	1.00[EUR][1000 genomes]
rs61765578	1.00[EUR][1000 genomes]
rs61765580	1.00[EUR][1000 genomes]
rs61765581	1.00[EUR][1000 genomes]
rs61765586	1.00[EUR][1000 genomes]
rs61765589	1.00[EUR][1000 genomes]
rs61765590	1.00[EUR][1000 genomes]
rs61765591	1.00[EUR][1000 genomes]
rs61765592	1.00[EUR][1000 genomes]
rs61765593	1.00[EUR][1000 genomes]
rs61765594	1.00[EUR][1000 genomes]
rs61765595	1.00[EUR][1000 genomes]
rs61765623	1.00[EUR][1000 genomes]
rs61765627	0.88[ASN][1000 genomes]
rs61765630	0.88[ASN][1000 genomes]
rs61765631	0.88[ASN][1000 genomes]
rs61765632	0.88[ASN][1000 genomes]
rs61765653	0.88[ASN][1000 genomes]
rs61765654	0.88[ASN][1000 genomes]
rs61765655	0.88[ASN][1000 genomes]
rs61765656	0.92[ASN][1000 genomes]
rs61765658	0.92[ASN][1000 genomes]
rs61765659	0.92[ASN][1000 genomes]
rs61767360	0.92[ASN][1000 genomes]
rs61767361	0.95[ASN][1000 genomes]
rs61767362	0.97[ASN][1000 genomes]
rs61767363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767393	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61767394	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767395	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767396	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767398	0.95[ASN][1000 genomes]
rs61767399	0.95[ASN][1000 genomes]
rs61767400	0.90[ASN][1000 genomes]
rs61767401	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767411	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767412	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	1.00[EUR][1000 genomes]
rs61767516	1.00[EUR][1000 genomes]
rs61767517	1.00[EUR][1000 genomes]
rs6587766	0.80[ASN][1000 genomes]
rs6695086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2754702	chr1:57716116-57743244	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57735200-57747200	Weak transcription	Esophagus	oesophagus
2	chr1:57737400-57746800	Weak transcription	Fetal Brain Female	brain
3	chr1:57737600-57744200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:57741800-57749400	Enhancers	Fetal Intestine Small	intestine
5	chr1:57742000-57749200	Enhancers	Liver	Liver
6	chr1:57742200-57755400	Weak transcription	Fetal Brain Male	brain
7	chr1:57742400-57742600	Enhancers	Fetal Intestine Large	intestine
8	chr1:57742400-57743400	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links