Variant report

Variant	rs61765586
Chromosome Location	chr1:57671043-57671044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs12032549	1.00[EUR][1000 genomes]
rs12561986	1.00[EUR][1000 genomes]
rs12562392	1.00[EUR][1000 genomes]
rs12562394	1.00[EUR][1000 genomes]
rs12562847	1.00[EUR][1000 genomes]
rs12562930	1.00[EUR][1000 genomes]
rs12563280	0.82[AMR][1000 genomes]
rs12563894	1.00[EUR][1000 genomes]
rs12566131	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12567904	1.00[EUR][1000 genomes]
rs12567967	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568148	1.00[EUR][1000 genomes]
rs12568862	1.00[EUR][1000 genomes]
rs12568928	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568979	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568992	0.82[ASN][1000 genomes]
rs12569224	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs17115397	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17115580	1.00[EUR][1000 genomes]
rs17115587	1.00[EUR][1000 genomes]
rs17421839	1.00[EUR][1000 genomes]
rs17422039	1.00[EUR][1000 genomes]
rs17455469	1.00[EUR][1000 genomes]
rs17455616	1.00[EUR][1000 genomes]
rs17455728	1.00[EUR][1000 genomes]
rs17455840	1.00[EUR][1000 genomes]
rs197599	0.82[ASN][1000 genomes]
rs197606	0.96[ASN][1000 genomes]
rs197623	0.82[ASN][1000 genomes]
rs34736592	0.92[ASN][1000 genomes]
rs41286864	0.86[EUR][1000 genomes]
rs59015063	0.94[ASN][1000 genomes]
rs59762173	1.00[EUR][1000 genomes]
rs61765266	0.86[EUR][1000 genomes]
rs61765267	0.86[EUR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765563	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765578	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765580	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61765581	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765582	0.94[ASN][1000 genomes]
rs61765589	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765590	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765591	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61765592	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61765593	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765594	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765595	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765623	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61767363	1.00[EUR][1000 genomes]
rs61767364	1.00[EUR][1000 genomes]
rs61767365	1.00[EUR][1000 genomes]
rs61767367	1.00[EUR][1000 genomes]
rs61767368	1.00[EUR][1000 genomes]
rs61767384	1.00[EUR][1000 genomes]
rs61767385	1.00[EUR][1000 genomes]
rs61767386	1.00[EUR][1000 genomes]
rs61767387	1.00[EUR][1000 genomes]
rs61767388	1.00[EUR][1000 genomes]
rs61767389	1.00[EUR][1000 genomes]
rs61767390	1.00[EUR][1000 genomes]
rs61767392	1.00[EUR][1000 genomes]
rs61767393	1.00[EUR][1000 genomes]
rs61767394	1.00[EUR][1000 genomes]
rs61767395	1.00[EUR][1000 genomes]
rs61767396	1.00[EUR][1000 genomes]
rs61767401	1.00[EUR][1000 genomes]
rs61767411	1.00[EUR][1000 genomes]
rs61767412	1.00[EUR][1000 genomes]
rs61767495	0.82[AMR][1000 genomes]
rs61767496	0.82[AMR][1000 genomes]
rs61767497	0.82[AMR][1000 genomes]
rs61767499	0.82[AMR][1000 genomes]
rs61767500	0.82[AMR][1000 genomes]
rs61767501	0.82[AMR][1000 genomes]
rs61767502	0.82[AMR][1000 genomes]
rs61767509	0.91[AMR][1000 genomes]
rs61767510	0.91[AMR][1000 genomes]
rs61767511	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61767512	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61767513	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61767516	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61767517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6695086	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57664600-57678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57665600-57671600	Weak transcription	Fetal Heart	heart
3	chr1:57668600-57671600	Weak transcription	Fetal Brain Male	brain
4	chr1:57669800-57672400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:57670200-57671200	Enhancers	Fetal Intestine Large	intestine
6	chr1:57670200-57672400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr1:57670200-57672400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:57670200-57672400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr1:57670200-57672400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr1:57670200-57672400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:57670400-57672400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:57670400-57672400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:57670400-57672600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:57670600-57672400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:57670600-57672600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:57670800-57671200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr1:57670800-57672400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:57670800-57672400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:57670800-57672600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:57671000-57671200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
21	chr1:57671000-57671200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr1:57671000-57671200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
23	chr1:57671000-57671200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:57671000-57671200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:57671000-57671400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
26	chr1:57671000-57671600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr1:57671000-57673800	Weak transcription	Fetal Intestine Small	intestine
28	chr1:57671000-57674600	Weak transcription	Fetal Brain Female	brain

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