Variant report

Variant	rs61767499
Chromosome Location	chr1:57638713-57638714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11206981	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12563280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12566131	0.91[AMR][1000 genomes]
rs155291	0.86[ASN][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs41286864	0.86[EUR][1000 genomes]
rs61765266	0.86[EUR][1000 genomes]
rs61765267	0.86[EUR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	0.91[AMR][1000 genomes]
rs61765563	0.91[AMR][1000 genomes]
rs61765578	0.91[AMR][1000 genomes]
rs61765580	0.91[AMR][1000 genomes]
rs61765581	0.91[AMR][1000 genomes]
rs61765586	0.82[AMR][1000 genomes]
rs61767494	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61767496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61767497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767509	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61767510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767513	0.91[AMR][1000 genomes]
rs61767515	0.91[AMR][1000 genomes]
rs61767516	0.91[AMR][1000 genomes]
rs61767517	0.91[AMR][1000 genomes]
rs636943	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57624000-57644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57633400-57639800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57636600-57638800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:57636600-57641400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:57637600-57639800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:57637600-57641400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:57637800-57638800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:57637800-57640800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:57638000-57639000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr1:57638200-57639400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:57638400-57638800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:57638400-57638800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:57638400-57638800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:57638600-57644800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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