Variant report

Variant	rs17115222
Chromosome Location	chr1:57616348-57616349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs11206975	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11206981	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11206992	1.00[JPT][hapmap]
rs12032549	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12069180	0.83[ASN][1000 genomes]
rs12406184	0.86[EUR][1000 genomes]
rs12408256	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12561986	0.86[EUR][1000 genomes]
rs12562392	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12562394	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12562609	1.00[CEU][hapmap]
rs12562847	0.86[EUR][1000 genomes]
rs12562930	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12563280	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12563894	0.86[EUR][1000 genomes]
rs12564278	1.00[CEU][hapmap]
rs12564961	1.00[CEU][hapmap]
rs12566131	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12566320	1.00[CEU][hapmap]
rs12567335	1.00[CEU][hapmap]
rs12567531	1.00[CEU][hapmap]
rs12567904	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12567967	0.86[EUR][1000 genomes]
rs12568148	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12568862	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12568928	0.86[EUR][1000 genomes]
rs12568979	0.86[EUR][1000 genomes]
rs12568992	1.00[JPT][hapmap]
rs12569224	0.86[EUR][1000 genomes]
rs155291	1.00[JPT][hapmap]
rs17115023	1.00[CEU][hapmap]
rs17115030	1.00[CEU][hapmap]
rs17115105	1.00[CEU][hapmap]
rs17115108	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs17115146	1.00[CEU][hapmap]
rs17115155	1.00[CEU][hapmap]
rs17115397	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17115580	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17115587	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17420013	1.00[CEU][hapmap]
rs17420216	1.00[CEU][hapmap]
rs17421219	1.00[CEU][hapmap]
rs17421839	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17422039	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17455073	1.00[CEU][hapmap]
rs17455469	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17455616	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17455728	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17455840	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs41286864	1.00[EUR][1000 genomes]
rs59762173	0.86[EUR][1000 genomes]
rs61765266	1.00[EUR][1000 genomes]
rs61765267	1.00[EUR][1000 genomes]
rs61765271	1.00[EUR][1000 genomes]
rs61765330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765333	0.86[EUR][1000 genomes]
rs61765561	0.86[EUR][1000 genomes]
rs61765563	0.86[EUR][1000 genomes]
rs61765578	0.86[EUR][1000 genomes]
rs61765580	0.86[EUR][1000 genomes]
rs61765581	0.86[EUR][1000 genomes]
rs61765586	0.86[EUR][1000 genomes]
rs61765589	0.86[EUR][1000 genomes]
rs61765590	0.86[EUR][1000 genomes]
rs61765591	0.86[EUR][1000 genomes]
rs61765592	0.86[EUR][1000 genomes]
rs61765593	0.86[EUR][1000 genomes]
rs61765594	0.86[EUR][1000 genomes]
rs61765595	0.86[EUR][1000 genomes]
rs61765623	0.86[EUR][1000 genomes]
rs61767363	0.86[EUR][1000 genomes]
rs61767364	0.86[EUR][1000 genomes]
rs61767365	0.86[EUR][1000 genomes]
rs61767367	0.86[EUR][1000 genomes]
rs61767368	0.86[EUR][1000 genomes]
rs61767384	0.86[EUR][1000 genomes]
rs61767385	0.86[EUR][1000 genomes]
rs61767386	0.86[EUR][1000 genomes]
rs61767387	0.86[EUR][1000 genomes]
rs61767388	0.86[EUR][1000 genomes]
rs61767389	0.86[EUR][1000 genomes]
rs61767390	0.86[EUR][1000 genomes]
rs61767392	0.86[EUR][1000 genomes]
rs61767393	0.86[EUR][1000 genomes]
rs61767394	0.86[EUR][1000 genomes]
rs61767395	0.86[EUR][1000 genomes]
rs61767396	0.86[EUR][1000 genomes]
rs61767401	0.86[EUR][1000 genomes]
rs61767411	0.86[EUR][1000 genomes]
rs61767412	0.86[EUR][1000 genomes]
rs61767494	0.86[EUR][1000 genomes]
rs61767495	0.86[EUR][1000 genomes]
rs61767496	0.86[EUR][1000 genomes]
rs61767497	0.86[EUR][1000 genomes]
rs61767499	0.86[EUR][1000 genomes]
rs61767500	0.86[EUR][1000 genomes]
rs61767501	0.86[EUR][1000 genomes]
rs61767502	0.86[EUR][1000 genomes]
rs61767509	0.86[EUR][1000 genomes]
rs61767510	0.86[EUR][1000 genomes]
rs61767511	0.86[EUR][1000 genomes]
rs61767512	0.86[EUR][1000 genomes]
rs61767514	0.86[EUR][1000 genomes]
rs61767515	0.86[EUR][1000 genomes]
rs61767516	0.86[EUR][1000 genomes]
rs61767517	0.86[EUR][1000 genomes]
rs636943	1.00[JPT][hapmap]
rs6695086	0.86[EUR][1000 genomes]
rs6697173	1.00[CEU][hapmap]
rs728719	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57551400-57622000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57609000-57621800	Weak transcription	Fetal Intestine Large	intestine

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