Variant report

Variant	rs61765623
Chromosome Location	chr1:57689579-57689580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs12032549	1.00[EUR][1000 genomes]
rs12561986	1.00[EUR][1000 genomes]
rs12562392	1.00[EUR][1000 genomes]
rs12562394	1.00[EUR][1000 genomes]
rs12562609	0.80[AMR][1000 genomes]
rs12562847	1.00[EUR][1000 genomes]
rs12562930	1.00[EUR][1000 genomes]
rs12563894	1.00[EUR][1000 genomes]
rs12565921	1.00[AMR][1000 genomes]
rs12566131	1.00[EUR][1000 genomes]
rs12567335	1.00[AMR][1000 genomes]
rs12567531	1.00[AMR][1000 genomes]
rs12567904	1.00[EUR][1000 genomes]
rs12567967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568148	1.00[EUR][1000 genomes]
rs12568708	1.00[AMR][1000 genomes]
rs12568862	1.00[EUR][1000 genomes]
rs12568928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568992	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12569224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs17115397	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17115580	1.00[EUR][1000 genomes]
rs17115587	1.00[EUR][1000 genomes]
rs17421219	0.80[AMR][1000 genomes]
rs17421839	1.00[EUR][1000 genomes]
rs17422039	1.00[EUR][1000 genomes]
rs17455073	0.80[AMR][1000 genomes]
rs17455469	1.00[EUR][1000 genomes]
rs17455616	1.00[EUR][1000 genomes]
rs17455728	1.00[EUR][1000 genomes]
rs17455840	1.00[EUR][1000 genomes]
rs197599	0.95[ASN][1000 genomes]
rs197623	1.00[ASN][1000 genomes]
rs41286864	0.86[EUR][1000 genomes]
rs59762173	1.00[EUR][1000 genomes]
rs61765266	0.86[EUR][1000 genomes]
rs61765267	0.86[EUR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	1.00[EUR][1000 genomes]
rs61765563	1.00[EUR][1000 genomes]
rs61765578	1.00[EUR][1000 genomes]
rs61765580	1.00[EUR][1000 genomes]
rs61765581	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765586	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765589	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765590	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765591	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61765592	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61765593	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765624	0.90[ASN][1000 genomes]
rs61765627	1.00[AMR][1000 genomes]
rs61765630	1.00[AMR][1000 genomes]
rs61765631	1.00[AMR][1000 genomes]
rs61765632	1.00[AMR][1000 genomes]
rs61765653	1.00[AMR][1000 genomes]
rs61765654	1.00[AMR][1000 genomes]
rs61765655	1.00[AMR][1000 genomes]
rs61765656	1.00[AMR][1000 genomes]
rs61765658	1.00[AMR][1000 genomes]
rs61765659	0.80[AMR][1000 genomes]
rs61767360	0.80[AMR][1000 genomes]
rs61767361	0.80[AMR][1000 genomes]
rs61767363	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767364	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767365	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61767367	1.00[EUR][1000 genomes]
rs61767368	1.00[EUR][1000 genomes]
rs61767384	1.00[EUR][1000 genomes]
rs61767385	1.00[EUR][1000 genomes]
rs61767386	1.00[EUR][1000 genomes]
rs61767387	1.00[EUR][1000 genomes]
rs61767388	1.00[EUR][1000 genomes]
rs61767389	1.00[EUR][1000 genomes]
rs61767390	1.00[EUR][1000 genomes]
rs61767392	1.00[EUR][1000 genomes]
rs61767393	1.00[EUR][1000 genomes]
rs61767394	1.00[EUR][1000 genomes]
rs61767395	1.00[EUR][1000 genomes]
rs61767396	1.00[EUR][1000 genomes]
rs61767401	1.00[EUR][1000 genomes]
rs61767411	1.00[EUR][1000 genomes]
rs61767412	1.00[EUR][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	1.00[EUR][1000 genomes]
rs61767516	1.00[EUR][1000 genomes]
rs61767517	1.00[EUR][1000 genomes]
rs6695086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57676000-57689800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57679200-57695000	Weak transcription	Fetal Brain Female	brain
4	chr1:57681800-57690000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:57682000-57690600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:57682200-57690200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:57683600-57694800	Weak transcription	Liver	Liver
8	chr1:57684000-57695400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:57684600-57690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:57688200-57690400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:57688400-57690000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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