Variant report

Variant	rs12567531
Chromosome Location	chr1:57706210-57706211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11206975	1.00[CEU][hapmap]
rs11206981	1.00[CEU][hapmap]
rs12032549	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12408256	1.00[CEU][hapmap]
rs12561986	0.88[ASN][1000 genomes]
rs12562392	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12562394	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12562555	1.00[JPT][hapmap]
rs12562609	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12562847	0.81[ASN][1000 genomes]
rs12562930	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12563280	1.00[CEU][hapmap]
rs12563894	0.85[ASN][1000 genomes]
rs12564258	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12564278	1.00[CEU][hapmap]
rs12564961	1.00[CEU][hapmap]
rs12565921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12566131	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12566162	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12566320	1.00[CEU][hapmap]
rs12567335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567904	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs12567967	1.00[AMR][1000 genomes]
rs12568148	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12568708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12568862	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12568928	1.00[AMR][1000 genomes]
rs12568979	1.00[AMR][1000 genomes]
rs12568992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12569224	1.00[AMR][1000 genomes]
rs17115023	1.00[CEU][hapmap]
rs17115030	1.00[CEU][hapmap]
rs17115105	1.00[CEU][hapmap]
rs17115108	1.00[CEU][hapmap]
rs17115146	1.00[CEU][hapmap]
rs17115155	1.00[CEU][hapmap]
rs17115222	1.00[CEU][hapmap]
rs17115397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115441	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17115445	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17115580	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17115587	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17420013	1.00[CEU][hapmap]
rs17420216	1.00[CEU][hapmap]
rs17421219	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17421839	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17422039	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17455073	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17455469	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17455616	1.00[CEU][hapmap]
rs17455728	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17455840	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs197599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs197606	1.00[JPT][hapmap]
rs197623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59762173	0.88[ASN][1000 genomes]
rs61765589	0.90[AMR][1000 genomes]
rs61765590	0.90[AMR][1000 genomes]
rs61765592	0.90[AMR][1000 genomes]
rs61765593	0.91[AMR][1000 genomes]
rs61765594	1.00[AMR][1000 genomes]
rs61765595	1.00[AMR][1000 genomes]
rs61765623	1.00[AMR][1000 genomes]
rs61765624	0.83[ASN][1000 genomes]
rs61765627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765631	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765659	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767360	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767361	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61767362	0.85[ASN][1000 genomes]
rs61767363	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61767364	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61767365	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61767367	0.88[ASN][1000 genomes]
rs61767368	0.88[ASN][1000 genomes]
rs61767384	0.88[ASN][1000 genomes]
rs61767385	0.88[ASN][1000 genomes]
rs61767386	0.88[ASN][1000 genomes]
rs61767387	0.88[ASN][1000 genomes]
rs61767388	0.88[ASN][1000 genomes]
rs61767389	0.88[ASN][1000 genomes]
rs61767390	0.88[ASN][1000 genomes]
rs61767392	0.88[ASN][1000 genomes]
rs61767394	0.85[ASN][1000 genomes]
rs61767395	0.85[ASN][1000 genomes]
rs61767396	0.85[ASN][1000 genomes]
rs61767398	0.83[ASN][1000 genomes]
rs61767399	0.83[ASN][1000 genomes]
rs61767401	0.81[ASN][1000 genomes]
rs61767411	0.81[ASN][1000 genomes]
rs6587766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6697173	1.00[CEU][hapmap]
rs728719	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57702200-57707400	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57702200-57711800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57705200-57712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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