Variant report

Variant	rs61767401
Chromosome Location	chr1:57771358-57771359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs12032549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12561986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12562392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12562394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12562555	0.97[ASN][1000 genomes]
rs12562609	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12562847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12563894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12564258	0.97[ASN][1000 genomes]
rs12565921	0.85[ASN][1000 genomes]
rs12566131	1.00[EUR][1000 genomes]
rs12566162	0.97[ASN][1000 genomes]
rs12567335	0.81[ASN][1000 genomes]
rs12567531	0.81[ASN][1000 genomes]
rs12567904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12567967	1.00[EUR][1000 genomes]
rs12568148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12568708	0.85[ASN][1000 genomes]
rs12568862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12568928	1.00[EUR][1000 genomes]
rs12568979	1.00[EUR][1000 genomes]
rs12569224	1.00[EUR][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs17115397	1.00[EUR][1000 genomes]
rs17115441	0.81[ASN][1000 genomes]
rs17115445	0.81[ASN][1000 genomes]
rs17115580	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17115587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17421219	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17421839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17422039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17455073	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17455469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17455616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17455728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17455840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59762173	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	1.00[EUR][1000 genomes]
rs61765563	1.00[EUR][1000 genomes]
rs61765578	1.00[EUR][1000 genomes]
rs61765580	1.00[EUR][1000 genomes]
rs61765581	1.00[EUR][1000 genomes]
rs61765586	1.00[EUR][1000 genomes]
rs61765589	1.00[EUR][1000 genomes]
rs61765590	1.00[EUR][1000 genomes]
rs61765591	1.00[EUR][1000 genomes]
rs61765592	1.00[EUR][1000 genomes]
rs61765593	1.00[EUR][1000 genomes]
rs61765594	1.00[EUR][1000 genomes]
rs61765595	1.00[EUR][1000 genomes]
rs61765623	1.00[EUR][1000 genomes]
rs61765627	0.81[ASN][1000 genomes]
rs61765630	0.81[ASN][1000 genomes]
rs61765631	0.81[ASN][1000 genomes]
rs61765632	0.81[ASN][1000 genomes]
rs61765653	0.81[ASN][1000 genomes]
rs61765654	0.81[ASN][1000 genomes]
rs61765655	0.81[ASN][1000 genomes]
rs61765656	0.85[ASN][1000 genomes]
rs61765658	0.85[ASN][1000 genomes]
rs61765659	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767360	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767361	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61767362	0.90[ASN][1000 genomes]
rs61767363	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767364	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767365	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767387	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61767393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61767394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61767395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61767396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61767398	0.87[ASN][1000 genomes]
rs61767399	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61767400	0.97[ASN][1000 genomes]
rs61767411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	1.00[EUR][1000 genomes]
rs61767516	1.00[EUR][1000 genomes]
rs61767517	1.00[EUR][1000 genomes]
rs6695086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57769800-57771600	Weak transcription	Fetal Heart	heart
2	chr1:57770000-57775400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57770200-57772000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:57770400-57772600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:57770400-57772600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:57770400-57772800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:57770600-57772600	Genic enhancers	Fetal Intestine Large	intestine
8	chr1:57770800-57776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:57771000-57771600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:57771000-57772000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:57771000-57773400	Weak transcription	HepG2	liver
12	chr1:57771000-57773800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:57771200-57771400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:57771200-57772000	Weak transcription	Fetal Intestine Small	intestine

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