Variant report

Variant	rs61765590
Chromosome Location	chr1:57676966-57676967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57676953..57678996-chr1:57679992..57682329,2	K562	blood:
2	chr1:57674738..57677987-chr1:57681554..57684288,3	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs12032549	1.00[EUR][1000 genomes]
rs12561986	1.00[EUR][1000 genomes]
rs12562392	1.00[EUR][1000 genomes]
rs12562394	1.00[EUR][1000 genomes]
rs12562847	1.00[EUR][1000 genomes]
rs12562930	1.00[EUR][1000 genomes]
rs12563894	1.00[EUR][1000 genomes]
rs12565921	0.90[AMR][1000 genomes]
rs12566131	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12567335	0.90[AMR][1000 genomes]
rs12567531	0.90[AMR][1000 genomes]
rs12567904	1.00[EUR][1000 genomes]
rs12567967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568148	1.00[EUR][1000 genomes]
rs12568708	0.90[AMR][1000 genomes]
rs12568862	1.00[EUR][1000 genomes]
rs12568928	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568979	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568992	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12569224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17115222	0.86[EUR][1000 genomes]
rs17115397	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17115580	1.00[EUR][1000 genomes]
rs17115587	1.00[EUR][1000 genomes]
rs17421839	1.00[EUR][1000 genomes]
rs17422039	1.00[EUR][1000 genomes]
rs17455469	1.00[EUR][1000 genomes]
rs17455616	1.00[EUR][1000 genomes]
rs17455728	1.00[EUR][1000 genomes]
rs17455840	1.00[EUR][1000 genomes]
rs197599	0.82[ASN][1000 genomes]
rs197606	0.96[ASN][1000 genomes]
rs197623	0.82[ASN][1000 genomes]
rs34736592	0.92[ASN][1000 genomes]
rs41286864	0.86[EUR][1000 genomes]
rs59015063	0.94[ASN][1000 genomes]
rs59762173	1.00[EUR][1000 genomes]
rs61765266	0.86[EUR][1000 genomes]
rs61765267	0.86[EUR][1000 genomes]
rs61765271	0.86[EUR][1000 genomes]
rs61765330	0.86[EUR][1000 genomes]
rs61765331	0.86[EUR][1000 genomes]
rs61765332	0.86[EUR][1000 genomes]
rs61765561	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765563	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765578	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61765580	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61765581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765582	0.94[ASN][1000 genomes]
rs61765586	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765591	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61765592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61765593	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765594	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765595	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765623	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61765627	0.90[AMR][1000 genomes]
rs61765630	0.90[AMR][1000 genomes]
rs61765631	0.90[AMR][1000 genomes]
rs61765632	0.90[AMR][1000 genomes]
rs61765653	0.90[AMR][1000 genomes]
rs61765654	0.90[AMR][1000 genomes]
rs61765655	0.90[AMR][1000 genomes]
rs61765656	0.90[AMR][1000 genomes]
rs61765658	0.90[AMR][1000 genomes]
rs61767363	1.00[EUR][1000 genomes]
rs61767364	1.00[EUR][1000 genomes]
rs61767365	1.00[EUR][1000 genomes]
rs61767367	1.00[EUR][1000 genomes]
rs61767368	1.00[EUR][1000 genomes]
rs61767384	1.00[EUR][1000 genomes]
rs61767385	1.00[EUR][1000 genomes]
rs61767386	1.00[EUR][1000 genomes]
rs61767387	1.00[EUR][1000 genomes]
rs61767388	1.00[EUR][1000 genomes]
rs61767389	1.00[EUR][1000 genomes]
rs61767390	1.00[EUR][1000 genomes]
rs61767392	1.00[EUR][1000 genomes]
rs61767393	1.00[EUR][1000 genomes]
rs61767394	1.00[EUR][1000 genomes]
rs61767395	1.00[EUR][1000 genomes]
rs61767396	1.00[EUR][1000 genomes]
rs61767401	1.00[EUR][1000 genomes]
rs61767411	1.00[EUR][1000 genomes]
rs61767412	1.00[EUR][1000 genomes]
rs61767511	0.86[ASN][1000 genomes]
rs61767512	0.86[ASN][1000 genomes]
rs61767513	0.90[ASN][1000 genomes]
rs61767514	1.00[EUR][1000 genomes]
rs61767515	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61767516	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61767517	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6695086	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57664600-57678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57672400-57680600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:57672400-57680800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:57672600-57680800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:57675600-57678600	Weak transcription	Fetal Brain Male	brain
6	chr1:57675600-57678600	Weak transcription	Fetal Brain Female	brain
7	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:57675800-57680800	Weak transcription	Fetal Heart	heart
9	chr1:57676000-57689800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links