Variant report

Variant	rs61767513
Chromosome Location	chr1:57654952-57654953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12563280	0.91[AMR][1000 genomes]
rs12566131	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs197606	0.86[ASN][1000 genomes]
rs34736592	0.94[ASN][1000 genomes]
rs59015063	0.96[ASN][1000 genomes]
rs61765561	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61765563	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61765578	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61765580	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61765581	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61765582	0.84[ASN][1000 genomes]
rs61765586	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61765589	0.90[ASN][1000 genomes]
rs61765590	0.90[ASN][1000 genomes]
rs61767495	0.91[AMR][1000 genomes]
rs61767496	0.91[AMR][1000 genomes]
rs61767497	0.91[AMR][1000 genomes]
rs61767499	0.91[AMR][1000 genomes]
rs61767500	0.91[AMR][1000 genomes]
rs61767501	0.91[AMR][1000 genomes]
rs61767502	0.91[AMR][1000 genomes]
rs61767509	1.00[AMR][1000 genomes]
rs61767510	1.00[AMR][1000 genomes]
rs61767511	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61767512	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61767515	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61767516	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61767517	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6695086	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57647000-57670600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57647200-57655800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57652200-57655200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:57654800-57658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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