Variant report

Variant	rs197606
Chromosome Location	chr1:57679080-57679081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12032549	0.82[JPT][hapmap]
rs12562392	1.00[JPT][hapmap]
rs12562394	0.82[JPT][hapmap]
rs12562555	1.00[JPT][hapmap]
rs12562609	1.00[JPT][hapmap]
rs12562930	1.00[JPT][hapmap]
rs12564258	1.00[JPT][hapmap]
rs12566131	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12566162	1.00[JPT][hapmap]
rs12567335	1.00[JPT][hapmap]
rs12567531	1.00[JPT][hapmap]
rs12567904	0.86[JPT][hapmap]
rs12568148	1.00[JPT][hapmap]
rs12568862	1.00[JPT][hapmap]
rs12568992	1.00[JPT][hapmap]
rs17115397	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17115441	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17115445	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17115580	0.86[JPT][hapmap]
rs17115587	1.00[JPT][hapmap]
rs17421219	1.00[JPT][hapmap]
rs17421839	1.00[JPT][hapmap]
rs17422039	1.00[JPT][hapmap]
rs17455073	1.00[JPT][hapmap]
rs17455469	1.00[JPT][hapmap]
rs17455728	1.00[JPT][hapmap]
rs17455840	1.00[JPT][hapmap]
rs197599	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs197604	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs197605	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs197607	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs197623	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs34736592	0.92[ASN][1000 genomes]
rs59015063	0.90[ASN][1000 genomes]
rs61765561	0.90[ASN][1000 genomes]
rs61765563	0.90[ASN][1000 genomes]
rs61765578	0.90[ASN][1000 genomes]
rs61765580	0.92[ASN][1000 genomes]
rs61765581	0.96[ASN][1000 genomes]
rs61765582	0.94[ASN][1000 genomes]
rs61765586	0.96[ASN][1000 genomes]
rs61765589	0.96[ASN][1000 genomes]
rs61765590	0.96[ASN][1000 genomes]
rs61765591	0.80[ASN][1000 genomes]
rs61765592	0.80[ASN][1000 genomes]
rs61767511	0.82[ASN][1000 genomes]
rs61767512	0.82[ASN][1000 genomes]
rs61767513	0.86[ASN][1000 genomes]
rs61767515	0.90[ASN][1000 genomes]
rs61767516	0.90[ASN][1000 genomes]
rs61767517	0.90[ASN][1000 genomes]
rs6587766	1.00[JPT][hapmap]
rs6695086	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57672400-57680600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:57672400-57680800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:57672600-57680800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
5	chr1:57675800-57680800	Weak transcription	Fetal Heart	heart
6	chr1:57676000-57689800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:57678600-57679200	Enhancers	Fetal Brain Male	brain
8	chr1:57678600-57679200	Enhancers	Fetal Brain Female	brain
9	chr1:57678600-57684600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:57678800-57680600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:57678800-57681000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:57679000-57679200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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