Variant report

Variant	rs12568992
Chromosome Location	chr1:57692150-57692151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11206981	1.00[JPT][hapmap]
rs11206992	1.00[JPT][hapmap]
rs12562392	1.00[JPT][hapmap]
rs12562555	1.00[JPT][hapmap]
rs12562609	1.00[JPT][hapmap]
rs12562930	1.00[JPT][hapmap]
rs12563280	1.00[JPT][hapmap]
rs12564258	1.00[JPT][hapmap]
rs12565921	0.91[AMR][1000 genomes]
rs12566131	1.00[JPT][hapmap]
rs12566162	1.00[JPT][hapmap]
rs12567335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12567531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs12567904	1.00[JPT][hapmap]
rs12567967	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12568148	1.00[JPT][hapmap]
rs12568708	0.91[AMR][1000 genomes]
rs12568862	1.00[JPT][hapmap]
rs12568928	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12568979	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12569224	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs155291	1.00[JPT][hapmap]
rs17115222	1.00[JPT][hapmap]
rs17115397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17115441	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17115587	1.00[JPT][hapmap]
rs17421219	1.00[JPT][hapmap]
rs17421839	1.00[JPT][hapmap]
rs17422039	1.00[JPT][hapmap]
rs17455073	1.00[JPT][hapmap]
rs17455469	1.00[JPT][hapmap]
rs17455728	1.00[JPT][hapmap]
rs17455840	1.00[JPT][hapmap]
rs197599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs197606	1.00[JPT][hapmap]
rs197623	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3850551	1.00[JPT][hapmap]
rs61765581	0.82[ASN][1000 genomes]
rs61765586	0.82[ASN][1000 genomes]
rs61765589	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61765590	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61765591	0.98[ASN][1000 genomes]
rs61765592	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61765593	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61765594	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61765595	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61765623	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61765624	0.90[ASN][1000 genomes]
rs61765627	0.91[AMR][1000 genomes]
rs61765630	0.91[AMR][1000 genomes]
rs61765631	0.91[AMR][1000 genomes]
rs61765632	0.91[AMR][1000 genomes]
rs61765653	0.91[AMR][1000 genomes]
rs61765654	0.91[AMR][1000 genomes]
rs61765655	0.91[AMR][1000 genomes]
rs61765656	0.91[AMR][1000 genomes]
rs61765658	0.91[AMR][1000 genomes]
rs636943	1.00[JPT][hapmap]
rs6587766	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57679200-57695000	Weak transcription	Fetal Brain Female	brain
3	chr1:57683600-57694800	Weak transcription	Liver	Liver
4	chr1:57684000-57695400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:57690200-57692600	Weak transcription	Fetal Intestine Small	intestine
6	chr1:57690600-57695400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:57692000-57692200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:57692000-57692200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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