Variant report

Variant	rs61765659
Chromosome Location	chr1:57726048-57726049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12032549	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12561986	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12562392	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12562394	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12562555	0.83[ASN][1000 genomes]
rs12562609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562847	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12562930	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12563894	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12564258	0.83[ASN][1000 genomes]
rs12565921	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12566162	0.83[ASN][1000 genomes]
rs12567335	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12567531	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12567904	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12567967	0.80[AMR][1000 genomes]
rs12568148	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12568708	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568862	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12568928	0.80[AMR][1000 genomes]
rs12568979	0.80[AMR][1000 genomes]
rs12569224	0.80[AMR][1000 genomes]
rs17115441	0.95[ASN][1000 genomes]
rs17115445	0.95[ASN][1000 genomes]
rs17115580	0.83[ASN][1000 genomes]
rs17115587	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17421219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17421839	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17422039	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17455073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17455469	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17455616	0.90[AMR][1000 genomes]
rs17455728	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17455840	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59762173	0.92[ASN][1000 genomes]
rs61765594	0.80[AMR][1000 genomes]
rs61765595	0.80[AMR][1000 genomes]
rs61765623	0.80[AMR][1000 genomes]
rs61765627	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765630	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765631	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765632	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765653	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765654	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765655	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61765656	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61765658	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61767361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61767362	0.90[ASN][1000 genomes]
rs61767363	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767364	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767365	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767367	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767368	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767384	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767385	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767386	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767387	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767388	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767389	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767390	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767392	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61767393	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61767394	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767395	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767396	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61767398	0.87[ASN][1000 genomes]
rs61767399	0.87[ASN][1000 genomes]
rs61767400	0.83[ASN][1000 genomes]
rs61767401	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767411	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61767412	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6587766	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2754702	chr1:57716116-57743244	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57712400-57728000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:57712600-57727800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:57712800-57731200	Weak transcription	Fetal Intestine Small	intestine
4	chr1:57717200-57726200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:57718800-57727800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:57724400-57726200	Enhancers	Brain Anterior Caudate	brain
7	chr1:57724400-57726400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:57724400-57726400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:57725600-57729000	Weak transcription	Brain Germinal Matrix	brain

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