Variant report

Variant	rs12060287
Chromosome Location	chr1:57683637-57683638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11206964	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12133813	1.00[CHB][hapmap]
rs1394396	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs149766	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs197612	1.00[CHB][hapmap]
rs504971	1.00[ASN][1000 genomes]
rs510230	1.00[ASN][1000 genomes]
rs524780	1.00[ASN][1000 genomes]
rs534569	1.00[CHB][hapmap]
rs537159	1.00[ASN][1000 genomes]
rs554795	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs60103052	1.00[EUR][1000 genomes]
rs60311519	1.00[ASN][1000 genomes]
rs61257570	1.00[EUR][1000 genomes]
rs6587766	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57675600-57692600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:57676000-57689800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:57678600-57684600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57679200-57695000	Weak transcription	Fetal Brain Female	brain
5	chr1:57680800-57684000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:57680800-57684800	Enhancers	Fetal Heart	heart
7	chr1:57681800-57684200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:57681800-57684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57681800-57690000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:57682000-57687800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:57682000-57690600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:57682200-57690200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:57682600-57686000	Enhancers	K562	blood
14	chr1:57683000-57684000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:57683600-57683800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:57683600-57694800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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