Variant report

Variant	rs11207052
Chromosome Location	chr1:57984991-57984992
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11207045	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11207046	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11581152	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12407168	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17427990	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2000140	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2691437	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2793643	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2793644	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6587769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689292	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67047428	0.93[EUR][1000 genomes]
rs72676926	0.96[EUR][1000 genomes]
rs72676931	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72676934	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72676937	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870802	chr1:57965114-58037031	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57983000-57985000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:57983200-57985200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:57983800-57988400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:57984000-57985000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:57984000-57985000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:57984000-57987200	Enhancers	Hela-S3	cervix
7	chr1:57984600-57986400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links