Variant report

Variant	rs2793644
Chromosome Location	chr1:57968598-57968599
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10443217	0.84[JPT][hapmap]
rs10493226	0.86[YRI][hapmap]
rs10493227	0.89[YRI][hapmap]
rs11207045	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11207046	0.94[EUR][1000 genomes]
rs11207048	0.81[YRI][hapmap]
rs11207049	0.86[YRI][hapmap]
rs11207050	0.86[YRI][hapmap]
rs11207052	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11581152	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs11805586	0.82[YRI][hapmap]
rs11810273	0.82[YRI][hapmap]
rs12063594	0.86[YRI][hapmap]
rs12065019	0.89[YRI][hapmap]
rs12067444	0.80[YRI][hapmap]
rs12067490	0.81[YRI][hapmap]
rs12407168	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs1341318	0.84[JPT][hapmap]
rs17427990	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs2000140	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2691430	0.86[YRI][hapmap]
rs2691433	0.86[YRI][hapmap]
rs2691434	0.86[YRI][hapmap]
rs2691437	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2691452	0.86[YRI][hapmap]
rs2691467	0.85[YRI][hapmap]
rs2793621	0.86[YRI][hapmap]
rs2793622	0.85[YRI][hapmap]
rs2793623	0.86[YRI][hapmap]
rs2793642	0.86[YRI][hapmap]
rs2793643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2805881	0.86[YRI][hapmap]
rs2805882	0.86[YRI][hapmap]
rs4310463	0.83[YRI][hapmap]
rs4348747	0.83[YRI][hapmap]
rs4526638	0.83[YRI][hapmap]
rs4553222	0.81[YRI][hapmap]
rs4620568	0.85[JPT][hapmap]
rs6587769	0.94[EUR][1000 genomes]
rs6681889	0.80[YRI][hapmap]
rs6689292	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs6694496	0.83[YRI][hapmap]
rs6700225	0.86[YRI][hapmap]
rs67047428	0.88[EUR][1000 genomes]
rs72676926	0.94[EUR][1000 genomes]
rs72676931	0.97[EUR][1000 genomes]
rs72676934	0.94[EUR][1000 genomes]
rs72676937	0.83[EUR][1000 genomes]
rs947243	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870802	chr1:57965114-58037031	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57955200-57972800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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