Variant report

Variant	rs112073883
Chromosome Location	chr10:54786423-54786424
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1826571	chr10:54765608-54788821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895405	chr10:54765608-54824741	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv508585	chr10:54769376-54796804	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1829213	chr10:54780677-54788671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1832289	chr10:54780677-54788671	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv895406	chr10:54780677-54830687	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3523695	chr10:54782396-54790044	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3509840	chr10:54782746-54790644	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3523693	chr10:54782796-54789894	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv18290	chr10:54783079-54788916	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv3503174	chr10:54783409-54788935	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv3523694	chr10:54783431-54788923	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv3523698	chr10:54783440-54789076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv3503062	chr10:54783466-54788878	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv3502840	chr10:54783466-54788901	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	esv3502951	chr10:54783466-54788957	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv3523697	chr10:54783486-54788877	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv3503285	chr10:54783543-54788830	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv3523699	chr10:54783543-54788830	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv1819872	chr10:54783695-54788821	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1821073	chr10:54783695-54788821	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv1830907	chr10:54783695-54788821	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv1843125	chr10:54783695-54788821	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	esv1845814	chr10:54783695-54788821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv550908	chr10:54784919-54788404	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv550909	chr10:54784919-54788458	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv1820028	chr10:54784919-54788671	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	esv1821901	chr10:54784919-54788671	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	esv1831859	chr10:54784919-54788671	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	esv1845365	chr10:54784919-54788671	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	esv1821304	chr10:54784919-54794208	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
40	esv1828095	chr10:54784919-54794208	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
41	esv1851757	chr10:54784919-54794208	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	esv3508729	chr10:54784971-54789819	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
43	esv3510951	chr10:54784971-54789819	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
44	nsv550910	chr10:54785799-54787935	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
45	nsv550911	chr10:54785799-54788404	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	nsv550912	chr10:54785799-54788458	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	nsv550913	chr10:54786129-54788404	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv550914	chr10:54786129-54788671	Weak transcription Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54783400-54789200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:54783600-54789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:54784800-54789600	Weak transcription	Lung	lung
4	chr10:54785200-54789400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:54785200-54789400	Weak transcription	Pancreas	Pancrea
6	chr10:54785200-54789400	Weak transcription	NHEK	skin
7	chr10:54785200-54789600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:54785200-54789600	Weak transcription	Hela-S3	cervix
9	chr10:54785200-54789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:54785400-54787200	Enhancers	Fetal Intestine Small	intestine
11	chr10:54785400-54787600	Enhancers	Fetal Intestine Large	intestine
12	chr10:54785400-54789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:54785400-54789600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:54785400-54789600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:54785400-54789800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:54785600-54787000	Enhancers	Fetal Kidney	kidney
17	chr10:54785600-54789600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:54785600-54789800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:54785800-54787400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr10:54785800-54789200	Weak transcription	HUVEC	blood vessel
21	chr10:54785800-54789200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:54785800-54789400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:54785800-54789400	Weak transcription	GM12878-XiMat	blood
24	chr10:54785800-54789800	Weak transcription	Fetal Lung	lung
25	chr10:54786000-54789200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:54786000-54789200	Weak transcription	Placenta	Placenta
27	chr10:54786000-54789400	Weak transcription	HepG2	liver
28	chr10:54786000-54789600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:54786000-54789800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:54786000-54790400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:54786200-54786600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:54786400-54789400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:54786400-54789400	Weak transcription	Stomach Mucosa	stomach

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