Variant report

Variant	rs11208920
Chromosome Location	chr1:67075312-67075313
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10443224	0.87[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs10493410	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11208909	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11208915	0.87[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11208923	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs11208926	0.95[ASN][1000 genomes]
rs11208931	0.95[ASN][1000 genomes]
rs11208938	1.00[JPT][hapmap]
rs11208941	0.95[JPT][hapmap]
rs1159851	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs1159852	0.86[ASN][1000 genomes]
rs11799970	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11806387	0.82[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12027701	0.91[ASN][1000 genomes]
rs12032485	1.00[JPT][hapmap]
rs12032691	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12037314	0.88[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs12039010	0.96[JPT][hapmap]
rs12040170	0.95[ASN][1000 genomes]
rs12041078	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12044655	0.95[ASN][1000 genomes]
rs12045543	0.95[ASN][1000 genomes]
rs12048321	0.95[ASN][1000 genomes]
rs12049347	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12116888	0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12120279	0.95[ASN][1000 genomes]
rs12121959	0.86[ASN][1000 genomes]
rs12124690	0.84[ASN][1000 genomes]
rs12125455	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12126819	0.95[ASN][1000 genomes]
rs12127199	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12127654	0.94[ASN][1000 genomes]
rs12127884	0.95[ASN][1000 genomes]
rs12128429	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12128496	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12129319	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs12131306	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12131909	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12135689	0.88[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs12138066	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12139975	0.94[ASN][1000 genomes]
rs12725322	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12726588	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12729740	0.88[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs12731043	0.95[ASN][1000 genomes]
rs12731104	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs12731112	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12741427	0.86[ASN][1000 genomes]
rs12746750	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs12751879	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1373910	0.83[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs1570814	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs17129280	0.92[JPT][hapmap]
rs1900105	0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1975523	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs1998717	1.00[JPT][hapmap]
rs1998718	0.96[JPT][hapmap]
rs2121041	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2218498	0.86[ASN][1000 genomes]
rs2312154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34007277	0.95[ASN][1000 genomes]
rs35156185	0.94[ASN][1000 genomes]
rs35902414	0.94[ASN][1000 genomes]
rs35939197	0.91[ASN][1000 genomes]
rs4233317	0.95[ASN][1000 genomes]
rs4428858	0.88[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs4462119	0.88[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs4488004	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4655496	0.86[ASN][1000 genomes]
rs4655497	0.86[ASN][1000 genomes]
rs4655499	0.95[ASN][1000 genomes]
rs4655500	0.95[ASN][1000 genomes]
rs4655501	0.88[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs4655502	0.95[ASN][1000 genomes]
rs4655503	0.88[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs4655619	0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655621	0.83[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655622	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4655623	0.83[ASN][1000 genomes]
rs4655624	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655625	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655626	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655629	0.94[ASN][1000 genomes]
rs4655637	0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4655641	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs4655644	0.95[ASN][1000 genomes]
rs4655645	0.95[ASN][1000 genomes]
rs4655649	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6679568	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680364	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6696812	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7528182	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7546825	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9787184	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67065600-67077000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:67065800-67078800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:67065800-67082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:67066200-67083800	Weak transcription	NHLF	lung
6	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:67066600-67077800	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:67068000-67082600	Weak transcription	NHDF-Ad	bronchial
9	chr1:67071200-67075400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:67073200-67079000	Weak transcription	Aorta	Aorta
12	chr1:67073600-67075400	Enhancers	Fetal Heart	heart
13	chr1:67073600-67075800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:67074000-67081200	Weak transcription	Brain Anterior Caudate	brain
15	chr1:67074600-67078000	Weak transcription	Brain Substantia Nigra	brain
16	chr1:67074800-67075400	Weak transcription	Right Ventricle	heart
17	chr1:67075000-67075400	Enhancers	Brain Cingulate Gyrus	brain
18	chr1:67075000-67075400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr1:67075200-67075400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:67075200-67075400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:67075200-67077400	Weak transcription	Fetal Lung	lung

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