Variant report

Variant	rs11211923
Chromosome Location	chr11:106682541-106682542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11211918	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211921	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211926	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211927	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211930	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211933	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211955	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211956	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1940385	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1944196	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3912582	0.81[ASN][1000 genomes]
rs7929737	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106679200-106692200	Weak transcription	Ovary	ovary
2	chr11:106681000-106686400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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