Variant report

Variant	rs11212361
Chromosome Location	chr11:107641954-107641955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:107641863-107642038	GM13977	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
2	CTCF	chr11:107641880-107642030	SAEC	small airway:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
3	CTCF	chr11:107641860-107642010	GM12865	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
4	CTCF	chr11:107641880-107642030	MCF-7	breast:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
5	CTCF	chr11:107641860-107642010	AG04449	skin:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
6	CTCF	chr11:107641860-107642010	SAEC	small airway:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
7	CTCF	chr11:107641233-107642315	SK-N-SH	brain:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
8	CTCF	chr11:107641940-107642090	GM12868	blood:	n/a	n/a
9	CTCF	chr11:107641720-107642147	MCF-7	breast:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
10	CTCF	chr11:107641920-107642070	GM12869	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641921-107641937
11	RAD21	chr11:107641787-107642065	H1-hESC	embryonic stem cell:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
12	CTCF	chr11:107641833-107642060	GM12878	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
13	CTCF	chr11:107641802-107642072	ECC-1	luminal epithelium:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
14	CTCF	chr11:107641860-107642010	HA-sp	spinal cord:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
15	RAD21	chr11:107641548-107642189	HCT-116	colon:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
16	ARID3A	chr11:107641785-107642088	K562	blood:	n/a	n/a
17	CTCF	chr11:107641920-107642070	WI-38	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641921-107641937
18	CTCF	chr11:107641721-107642123	IMR90	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
19	RAD21	chr11:107641790-107642063	HepG2	liver:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
20	CTCF	chr11:107641860-107642010	NHLF	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
21	CTCF	chr11:107641820-107641970	Hela-S3	cervix:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
22	CTCF	chr11:107641870-107642046	GM10266	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
23	CTCF	chr11:107641793-107642044	A549	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
24	CTCF	chr11:107641891-107641999	Lung_OC	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
25	CTCF	chr11:107641700-107642160	A549	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
26	CTCF	chr11:107641824-107642059	LNCaP	prostate:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
27	CTCF	chr11:107641820-107641970	AG09309	skin:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
28	CTCF	chr11:107641878-107642023	HepG2	liver:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
29	RAD21	chr11:107641709-107642162	ECC-1	luminal epithelium:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
30	CTCF	chr11:107641880-107642030	GM12874	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
31	CTCF	chr11:107641880-107642030	HCPEpiC	choroid plexus:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
32	CTCF	chr11:107641900-107642050	GM06990	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
33	CTCF	chr11:107641880-107642030	GM12867	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
34	CTCF	chr11:107641880-107642030	HRE	kidney:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
35	CTCF	chr11:107641920-107642070	GM12878	blood:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641921-107641937
36	CTCF	chr11:107641918-107641972	MCF-7	breast:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641921-107641937
37	SMC3	chr11:107641222-107642346	SK-N-SH	brain:	n/a	chr11:107641922-107641936
38	RAD21	chr11:107641724-107642108	GM12878	blood:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
39	CTCF	chr11:107641791-107642096	Medullo	brain:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
40	RAD21	chr11:107641792-107642050	GM12878	blood:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
41	CTCF	chr11:107641860-107642010	AoAF	blood vessel:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
42	SMC3	chr11:107641587-107642128	GM12878	blood:	n/a	chr11:107641922-107641936
43	CTCF	chr11:107641768-107642224	HCT-116	colon:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
44	CTCF	chr11:107641860-107642010	WERI-Rb-1	eye:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
45	RAD21	chr11:107641700-107642115	SK-N-SH_RA	brain:	n/a	chr11:107641920-107641932 chr11:107641918-107641937
46	CTCF	chr11:107641880-107642030	AG10803	skin:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
47	STAT3	chr11:107641879-107642121	MCF10A-Er-Src	breast:	n/a	n/a
48	CTCF	chr11:107641840-107641990	A549	lung:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937
49	CEBPB	chr11:107641274-107641972	IMR90	lung:	n/a	n/a
50	CTCF	chr11:107641860-107642010	HRE	kidney:	n/a	chr11:107641920-107641938 chr11:107641925-107641933 chr11:107641915-107641936 chr11:107641921-107641937

No.	Distal block	Cell Line	Cell type
1	chr11:107560069..107560995-chr11:107641497..107642096,3	MCF-7	breast:
2	chr11:107447313..107447854-chr11:107640968..107641965,2	K562	blood:
3	chr11:107641920..107642539-chr11:107651250..107651774,2	K562	blood:
4	chr11:107614634..107615702-chr11:107641448..107642000,3	MCF-7	breast:
5	chr11:107611768..107612356-chr11:107641576..107642546,2	MCF-7	breast:
6	chr11:107611439..107612355-chr11:107641879..107642586,3	K562	blood:

Variant related genes	Relation type
ENSG00000214306	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10502098	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs10502099	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs10502100	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs11823735	0.82[CEU][hapmap]
rs11825238	0.82[CEU][hapmap]
rs11826203	0.85[CEU][hapmap]
rs12574687	0.91[EUR][1000 genomes]
rs12576861	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs12792230	1.00[CEU][hapmap]
rs12796583	0.91[EUR][1000 genomes]
rs12796590	0.91[EUR][1000 genomes]
rs12796978	0.97[EUR][1000 genomes]
rs12798509	1.00[EUR][1000 genomes]
rs12799369	0.88[EUR][1000 genomes]
rs12799717	0.97[EUR][1000 genomes]
rs12799921	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12800608	0.91[EUR][1000 genomes]
rs12801737	0.97[EUR][1000 genomes]
rs12801961	0.97[EUR][1000 genomes]
rs12803756	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs12804204	0.97[EUR][1000 genomes]
rs12804516	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs12804640	0.91[EUR][1000 genomes]
rs12808103	0.97[EUR][1000 genomes]
rs12808838	0.82[CEU][hapmap]
rs12808961	0.91[EUR][1000 genomes]
rs17107441	0.91[EUR][1000 genomes]
rs17107492	0.91[EUR][1000 genomes]
rs17174388	0.91[EUR][1000 genomes]
rs1807943	0.97[EUR][1000 genomes]
rs2016912	0.97[EUR][1000 genomes]
rs2016916	0.97[EUR][1000 genomes]
rs2305282	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs2305283	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2305284	0.91[EUR][1000 genomes]
rs2305285	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2305286	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2305288	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs34326206	0.97[EUR][1000 genomes]
rs34327782	0.97[EUR][1000 genomes]
rs34375401	0.97[EUR][1000 genomes]
rs34524653	0.97[EUR][1000 genomes]
rs34552632	0.91[EUR][1000 genomes]
rs34558733	0.97[EUR][1000 genomes]
rs34793942	0.97[EUR][1000 genomes]
rs34963336	0.97[EUR][1000 genomes]
rs35059935	0.97[EUR][1000 genomes]
rs35118584	0.97[EUR][1000 genomes]
rs35154365	0.97[EUR][1000 genomes]
rs35481830	0.97[EUR][1000 genomes]
rs35745733	0.97[EUR][1000 genomes]
rs4753818	0.88[EUR][1000 genomes]
rs4754258	0.91[EUR][1000 genomes]
rs4754259	0.91[EUR][1000 genomes]
rs4754261	0.91[EUR][1000 genomes]
rs4754262	0.91[EUR][1000 genomes]
rs61066346	0.91[EUR][1000 genomes]
rs67735614	0.91[EUR][1000 genomes]
rs7108401	0.91[EUR][1000 genomes]
rs7108736	0.91[EUR][1000 genomes]
rs7109020	0.91[EUR][1000 genomes]
rs7109212	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs7109240	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs7122568	0.91[EUR][1000 genomes]
rs7123192	0.91[EUR][1000 genomes]
rs7125153	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs7126265	0.91[EUR][1000 genomes]
rs7129372	0.97[EUR][1000 genomes]
rs71464780	0.97[EUR][1000 genomes]
rs71488272	0.97[EUR][1000 genomes]
rs71488273	0.94[EUR][1000 genomes]
rs71488274	0.97[EUR][1000 genomes]
rs71488275	0.97[EUR][1000 genomes]
rs71488276	0.97[EUR][1000 genomes]
rs71488277	0.97[EUR][1000 genomes]
rs71488279	0.97[EUR][1000 genomes]
rs71488280	0.97[EUR][1000 genomes]
rs71488281	0.94[EUR][1000 genomes]
rs73544962	0.84[EUR][1000 genomes]
rs7935515	0.97[EUR][1000 genomes]
rs7935688	0.91[EUR][1000 genomes]
rs7945702	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1052198	chr11:107509918-107684371	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
12	nsv556378	chr11:107621538-107671626	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv556379	chr11:107627609-107671626	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv527748	chr11:107627852-107670228	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107638600-107642000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:107639600-107642000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:107640000-107642200	Enhancers	Fetal Brain Female	brain
4	chr11:107640400-107642400	Enhancers	Fetal Brain Male	brain
5	chr11:107640600-107642000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:107641400-107642000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr11:107641800-107642000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:107641800-107642200	Enhancers	NH-A	brain

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