Variant report

Variant	rs11212608
Chromosome Location	chr11:108264869-108264870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12271798	1.00[AMR][1000 genomes]
rs12272455	0.85[AFR][1000 genomes]
rs12274438	1.00[AMR][1000 genomes]
rs12277464	1.00[AMR][1000 genomes]
rs12278194	1.00[AMR][1000 genomes]
rs12279930	1.00[AMR][1000 genomes]
rs12288149	1.00[AMR][1000 genomes]
rs12290096	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56355831	1.00[AMR][1000 genomes]
rs7948919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv16145	chr11:108256476-108267672	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv556433	chr11:108256837-108265876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv556434	chr11:108256837-108266855	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv556435	chr11:108256859-108266855	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1828790	chr11:108257521-108264978	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108263000-108265000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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